miRNA display CGI


Results 21 - 40 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29424 5' -54 NC_006151.1 + 136360 0.7 0.805176
Target:  5'- cCCCGCggggcugcucucgUUCGCGGCGCUCUcGCG-Cu-- -3'
miRNA:   3'- -GGGCG-------------AAGCGCUGCGAGA-UGCuGuac -5'
29424 5' -54 NC_006151.1 + 78040 0.7 0.823534
Target:  5'- uCCCgGCgaCGCGGCGCaUCUggGCGACGc- -3'
miRNA:   3'- -GGG-CGaaGCGCUGCG-AGA--UGCUGUac -5'
29424 5' -54 NC_006151.1 + 15091 0.7 0.823534
Target:  5'- cCCCGacaCGCGGCGCcUCggggcCGACGUGa -3'
miRNA:   3'- -GGGCgaaGCGCUGCG-AGau---GCUGUAC- -5'
29424 5' -54 NC_006151.1 + 119864 0.7 0.832007
Target:  5'- aCCGCUUCGUGcgcACGCUCguggaGACGc- -3'
miRNA:   3'- gGGCGAAGCGC---UGCGAGaug--CUGUac -5'
29424 5' -54 NC_006151.1 + 123047 0.7 0.840297
Target:  5'- aCCUGCcggcCGCGGCGCUgcGCGACGc- -3'
miRNA:   3'- -GGGCGaa--GCGCUGCGAgaUGCUGUac -5'
29424 5' -54 NC_006151.1 + 68040 0.7 0.840297
Target:  5'- gCCCGCcggCGCGGCgggcacggGCUCgGCGACGg- -3'
miRNA:   3'- -GGGCGaa-GCGCUG--------CGAGaUGCUGUac -5'
29424 5' -54 NC_006151.1 + 39153 0.7 0.840297
Target:  5'- aCCCGCgcCGCGGCGgcCUCU-CGGCGc- -3'
miRNA:   3'- -GGGCGaaGCGCUGC--GAGAuGCUGUac -5'
29424 5' -54 NC_006151.1 + 106380 0.7 0.840297
Target:  5'- gCCCGC--CGCGGCGCccgCUgcGCGACGg- -3'
miRNA:   3'- -GGGCGaaGCGCUGCGa--GA--UGCUGUac -5'
29424 5' -54 NC_006151.1 + 10618 0.7 0.848396
Target:  5'- cCCCGCgcgccCGCGuGCGCUCgugccggcGCGGCAUc -3'
miRNA:   3'- -GGGCGaa---GCGC-UGCGAGa-------UGCUGUAc -5'
29424 5' -54 NC_006151.1 + 54344 0.69 0.856296
Target:  5'- -aCGCUcaaCGCGGCGCgCUACGAggaCGUGg -3'
miRNA:   3'- ggGCGAa--GCGCUGCGaGAUGCU---GUAC- -5'
29424 5' -54 NC_006151.1 + 10191 0.69 0.863991
Target:  5'- uUCGCcggUCGCGGCGCgg-GCGGCGg- -3'
miRNA:   3'- gGGCGa--AGCGCUGCGagaUGCUGUac -5'
29424 5' -54 NC_006151.1 + 63887 0.69 0.863991
Target:  5'- gUCCGCgUCGgGGCGCUCgagcagGCGcGCGUa -3'
miRNA:   3'- -GGGCGaAGCgCUGCGAGa-----UGC-UGUAc -5'
29424 5' -54 NC_006151.1 + 105523 0.69 0.867011
Target:  5'- aCCGCaUgGCGGCGCgcaucgggcccgagCUGCGGCAc- -3'
miRNA:   3'- gGGCGaAgCGCUGCGa-------------GAUGCUGUac -5'
29424 5' -54 NC_006151.1 + 125493 0.69 0.871475
Target:  5'- -gCGCgucucggCGCGcAUGCUCgGCGACGUGa -3'
miRNA:   3'- ggGCGaa-----GCGC-UGCGAGaUGCUGUAC- -5'
29424 5' -54 NC_006151.1 + 63690 0.69 0.871475
Target:  5'- cUCCGaCUgggCGUGcGCGUUCgcgGCGACGUGg -3'
miRNA:   3'- -GGGC-GAa--GCGC-UGCGAGa--UGCUGUAC- -5'
29424 5' -54 NC_006151.1 + 54874 0.69 0.878742
Target:  5'- gCCGCUguggCGCGACGCgagCUGCucuuuGACu-- -3'
miRNA:   3'- gGGCGAa---GCGCUGCGa--GAUG-----CUGuac -5'
29424 5' -54 NC_006151.1 + 73337 0.69 0.878742
Target:  5'- gCCGCgcgUgGCGAagagGUUCUGCGGCAg- -3'
miRNA:   3'- gGGCGa--AgCGCUg---CGAGAUGCUGUac -5'
29424 5' -54 NC_006151.1 + 103306 0.69 0.878742
Target:  5'- gCUCGCgcggCGCGACGCcgagCUGCGcACGcUGg -3'
miRNA:   3'- -GGGCGaa--GCGCUGCGa---GAUGC-UGU-AC- -5'
29424 5' -54 NC_006151.1 + 127418 0.69 0.881587
Target:  5'- gCCCGCggggUCGCcucGGCGCUCgugcgcgagagccgGCGGCGc- -3'
miRNA:   3'- -GGGCGa---AGCG---CUGCGAGa-------------UGCUGUac -5'
29424 5' -54 NC_006151.1 + 84916 0.69 0.885787
Target:  5'- gCCGCg-CGCGGCGCcgcCUcCGGCGUGc -3'
miRNA:   3'- gGGCGaaGCGCUGCGa--GAuGCUGUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.