Results 1 - 20 of 250 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29428 | 3' | -64.9 | NC_006151.1 | + | 96194 | 1.07 | 0.000587 |
Target: 5'- cGAGCGCCAUGGGGCGCCGCGUCGCCGu -3' miRNA: 3'- -CUCGCGGUACCCCGCGGCGCAGCGGC- -5' |
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29428 | 3' | -64.9 | NC_006151.1 | + | 30914 | 0.66 | 0.506301 |
Target: 5'- uAGCGCCcgcGGGCGgcCCGCGcggaUCGCCc -3' miRNA: 3'- cUCGCGGuacCCCGC--GGCGC----AGCGGc -5' |
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29428 | 3' | -64.9 | NC_006151.1 | + | 11089 | 0.66 | 0.504465 |
Target: 5'- -cGUGCCAaguuuaGGGCGCUGCGacccagagagagCGCCGa -3' miRNA: 3'- cuCGCGGUac----CCCGCGGCGCa-----------GCGGC- -5' |
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29428 | 3' | -64.9 | NC_006151.1 | + | 58099 | 0.66 | 0.500801 |
Target: 5'- cGGGCcCCAggaaggcgaagacgGGcGGgGUCGCGUCGCCc -3' miRNA: 3'- -CUCGcGGUa-------------CC-CCgCGGCGCAGCGGc -5' |
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29428 | 3' | -64.9 | NC_006151.1 | + | 39316 | 0.66 | 0.500801 |
Target: 5'- cGGCGCCGUGGaguaccucugcucgcGGCucggcGCgGCGcggCGCCGg -3' miRNA: 3'- cUCGCGGUACC---------------CCG-----CGgCGCa--GCGGC- -5' |
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29428 | 3' | -64.9 | NC_006151.1 | + | 88148 | 0.66 | 0.49715 |
Target: 5'- uGAGCagGCCG-GGGuGCuCCGCGcaggCGCCGa -3' miRNA: 3'- -CUCG--CGGUaCCC-CGcGGCGCa---GCGGC- -5' |
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29428 | 3' | -64.9 | NC_006151.1 | + | 31342 | 0.66 | 0.49715 |
Target: 5'- cGGCGCCGUGGGccCGaCCcCGguccgCGCCGg -3' miRNA: 3'- cUCGCGGUACCCc-GC-GGcGCa----GCGGC- -5' |
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29428 | 3' | -64.9 | NC_006151.1 | + | 92677 | 0.66 | 0.49715 |
Target: 5'- cGGCGgCcgGGGacgcgcgcuCGCCGCG-CGCCGa -3' miRNA: 3'- cUCGCgGuaCCCc--------GCGGCGCaGCGGC- -5' |
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29428 | 3' | -64.9 | NC_006151.1 | + | 5366 | 0.66 | 0.49715 |
Target: 5'- cGGCGCCGgcGGGGCugucuCUGCGggggCGCCc -3' miRNA: 3'- cUCGCGGUa-CCCCGc----GGCGCa---GCGGc -5' |
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29428 | 3' | -64.9 | NC_006151.1 | + | 48585 | 0.66 | 0.506301 |
Target: 5'- -uGcCGCCcgGGGuGCGCCuCGUCGUg- -3' miRNA: 3'- cuC-GCGGuaCCC-CGCGGcGCAGCGgc -5' |
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29428 | 3' | -64.9 | NC_006151.1 | + | 104406 | 0.66 | 0.506301 |
Target: 5'- cGGCGgCGUGcuGGC-CCGCGcCGCCGc -3' miRNA: 3'- cUCGCgGUACc-CCGcGGCGCaGCGGC- -5' |
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29428 | 3' | -64.9 | NC_006151.1 | + | 3286 | 0.66 | 0.506301 |
Target: 5'- -uGCGCCA--GGGCgGCCGgGUCGaaGg -3' miRNA: 3'- cuCGCGGUacCCCG-CGGCgCAGCggC- -5' |
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29428 | 3' | -64.9 | NC_006151.1 | + | 103817 | 0.66 | 0.515522 |
Target: 5'- cGGCgGCCGUGGcGGCgGCCGUGgagaUGCuCGg -3' miRNA: 3'- cUCG-CGGUACC-CCG-CGGCGCa---GCG-GC- -5' |
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29428 | 3' | -64.9 | NC_006151.1 | + | 77478 | 0.66 | 0.515522 |
Target: 5'- -cGCGCCc--GGGaaCCGCGUCGUCGc -3' miRNA: 3'- cuCGCGGuacCCCgcGGCGCAGCGGC- -5' |
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29428 | 3' | -64.9 | NC_006151.1 | + | 68088 | 0.66 | 0.515522 |
Target: 5'- cAGCGCCucgaGGC-UCGCGUCGCCc -3' miRNA: 3'- cUCGCGGuaccCCGcGGCGCAGCGGc -5' |
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29428 | 3' | -64.9 | NC_006151.1 | + | 135163 | 0.66 | 0.506301 |
Target: 5'- cGGGCgcgGCCcgGacGGGCGCCGgcugcCGcCGCCGg -3' miRNA: 3'- -CUCG---CGGuaC--CCCGCGGC-----GCaGCGGC- -5' |
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29428 | 3' | -64.9 | NC_006151.1 | + | 31758 | 0.66 | 0.506301 |
Target: 5'- -cGCGCCugcGGcGGCgGgCGCG-CGCCGg -3' miRNA: 3'- cuCGCGGua-CC-CCG-CgGCGCaGCGGC- -5' |
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29428 | 3' | -64.9 | NC_006151.1 | + | 106680 | 0.66 | 0.506301 |
Target: 5'- cGGCGCUc--GGcGCGCCGgG-CGCCGg -3' miRNA: 3'- cUCGCGGuacCC-CGCGGCgCaGCGGC- -5' |
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29428 | 3' | -64.9 | NC_006151.1 | + | 99978 | 0.66 | 0.506301 |
Target: 5'- -cGCGCuCGUGGcGGCGCUGgCG-CGCg- -3' miRNA: 3'- cuCGCG-GUACC-CCGCGGC-GCaGCGgc -5' |
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29428 | 3' | -64.9 | NC_006151.1 | + | 24969 | 0.66 | 0.506301 |
Target: 5'- -cGCGCCGcGGccUGCCGCGUCaGCCc -3' miRNA: 3'- cuCGCGGUaCCccGCGGCGCAG-CGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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