miRNA display CGI


Results 41 - 60 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29428 5' -56 NC_006151.1 + 112011 0.71 0.643748
Target:  5'- aCGCGGCGGcGGCGauuuuccCGgcGGGAGCUGGg -3'
miRNA:   3'- -GCGCCGCU-CCGCgu-----GU--UUCUUGACCa -5'
29428 5' -56 NC_006151.1 + 39348 0.71 0.643748
Target:  5'- gCGCGGCGcGGCGCcggcuCAucGuGCUGGa -3'
miRNA:   3'- -GCGCCGCuCCGCGu----GUuuCuUGACCa -5'
29428 5' -56 NC_006151.1 + 52277 0.7 0.664334
Target:  5'- uCGUGGUcucGGGGCGCGCAAAGucguAgUGGc -3'
miRNA:   3'- -GCGCCG---CUCCGCGUGUUUCu---UgACCa -5'
29428 5' -56 NC_006151.1 + 57835 0.7 0.664334
Target:  5'- cCGCGGa-GGGCGCACGGgugcuccacGGcGCUGGUc -3'
miRNA:   3'- -GCGCCgcUCCGCGUGUU---------UCuUGACCA- -5'
29428 5' -56 NC_006151.1 + 78662 0.7 0.664334
Target:  5'- gGCGGcCGGGGCGCG---GGuGCUGGa -3'
miRNA:   3'- gCGCC-GCUCCGCGUguuUCuUGACCa -5'
29428 5' -56 NC_006151.1 + 112970 0.7 0.671517
Target:  5'- cCGUGGCGGacGCGCGCGcgccgccgagccugGGGGGCUGGa -3'
miRNA:   3'- -GCGCCGCUc-CGCGUGU--------------UUCUUGACCa -5'
29428 5' -56 NC_006151.1 + 139194 0.7 0.674591
Target:  5'- gGCGGuCGGGGCGCugGAGcucCUGGc -3'
miRNA:   3'- gCGCC-GCUCCGCGugUUUcuuGACCa -5'
29428 5' -56 NC_006151.1 + 40568 0.7 0.674591
Target:  5'- gGCGGCGGcGGcCGCGgCGGAGGGCUcGGc -3'
miRNA:   3'- gCGCCGCU-CC-GCGU-GUUUCUUGA-CCa -5'
29428 5' -56 NC_006151.1 + 46498 0.7 0.684814
Target:  5'- aGCaGCGGGGUGCACAcgGAGGAuCUGa- -3'
miRNA:   3'- gCGcCGCUCCGCGUGU--UUCUU-GACca -5'
29428 5' -56 NC_006151.1 + 29443 0.7 0.694993
Target:  5'- gGCGGCGGGGagaggggaCGCGgAGGGAGCgGGc -3'
miRNA:   3'- gCGCCGCUCC--------GCGUgUUUCUUGaCCa -5'
29428 5' -56 NC_006151.1 + 74318 0.7 0.705118
Target:  5'- uCGUGGUGcGGGUGCA---GGGGCUGGUu -3'
miRNA:   3'- -GCGCCGC-UCCGCGUguuUCUUGACCA- -5'
29428 5' -56 NC_006151.1 + 73047 0.7 0.71518
Target:  5'- gCGCGGUgGGGGUGCGCGGGGuccGCgUGGc -3'
miRNA:   3'- -GCGCCG-CUCCGCGUGUUUCu--UG-ACCa -5'
29428 5' -56 NC_006151.1 + 64753 0.7 0.71518
Target:  5'- aGCaGCGGGGCcaccguGCGCGGGG-GCUGGUu -3'
miRNA:   3'- gCGcCGCUCCG------CGUGUUUCuUGACCA- -5'
29428 5' -56 NC_006151.1 + 15445 0.7 0.71518
Target:  5'- cCGCGGCucGGUGUGCGAGGAcgACgGGg -3'
miRNA:   3'- -GCGCCGcuCCGCGUGUUUCU--UGaCCa -5'
29428 5' -56 NC_006151.1 + 88826 0.7 0.71518
Target:  5'- gGCGaGgGAGGCGUugGcGGAGCUGa- -3'
miRNA:   3'- gCGC-CgCUCCGCGugUuUCUUGACca -5'
29428 5' -56 NC_006151.1 + 58393 0.7 0.71518
Target:  5'- gCGCGGCGcagccggccauGGCGCGCA----GCUGGg -3'
miRNA:   3'- -GCGCCGCu----------CCGCGUGUuucuUGACCa -5'
29428 5' -56 NC_006151.1 + 9625 0.69 0.72517
Target:  5'- gGCGGCGAGGggggaaGCGgGAGGGAgaGGc -3'
miRNA:   3'- gCGCCGCUCCg-----CGUgUUUCUUgaCCa -5'
29428 5' -56 NC_006151.1 + 103961 0.69 0.72517
Target:  5'- uCGCGGCGcgccaGCGCGuCGgcGAGCUGGa -3'
miRNA:   3'- -GCGCCGCuc---CGCGU-GUuuCUUGACCa -5'
29428 5' -56 NC_006151.1 + 59003 0.69 0.735079
Target:  5'- gCGCGGCGuccagcGGCGCGuCGAAGccgccCUGGg -3'
miRNA:   3'- -GCGCCGCu-----CCGCGU-GUUUCuu---GACCa -5'
29428 5' -56 NC_006151.1 + 104001 0.69 0.735079
Target:  5'- gGCGGCcgugGAGGCGCGCcgcgcggcGGAGgUGGa -3'
miRNA:   3'- gCGCCG----CUCCGCGUGuu------UCUUgACCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.