miRNA display CGI


Results 1 - 20 of 259 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29429 3' -56.4 NC_006151.1 + 142247 0.66 0.867583
Target:  5'- cGaGGCGUCGGUcaucGCgGCGAGgaGCGCc -3'
miRNA:   3'- aC-CCGUAGUCG----CGgUGUUUgaCGCGc -5'
29429 3' -56.4 NC_006151.1 + 141628 0.67 0.791799
Target:  5'- cGGGCggGUCGcUGCCGCG-GCgGCGCGg -3'
miRNA:   3'- aCCCG--UAGUcGCGGUGUuUGaCGCGC- -5'
29429 3' -56.4 NC_006151.1 + 141508 0.66 0.849686
Target:  5'- cGGGCGUCuccacgggggccgaGGCGacggacgugaGCGAgcuGCUGCGCGa -3'
miRNA:   3'- aCCCGUAG--------------UCGCgg--------UGUU---UGACGCGC- -5'
29429 3' -56.4 NC_006151.1 + 140213 0.69 0.71429
Target:  5'- cGGGgG-CGGUGCUGCAGAacCUGCGCc -3'
miRNA:   3'- aCCCgUaGUCGCGGUGUUU--GACGCGc -5'
29429 3' -56.4 NC_006151.1 + 139938 0.66 0.847271
Target:  5'- gUGGGCcgccguccucgaguUCGGCGCCGagcaguucacccCGGACgggcgGCGCGu -3'
miRNA:   3'- -ACCCGu-------------AGUCGCGGU------------GUUUGa----CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 139299 0.66 0.852083
Target:  5'- -cGGCGUCuGCGgCGCGuGCUGCuCGa -3'
miRNA:   3'- acCCGUAGuCGCgGUGUuUGACGcGC- -5'
29429 3' -56.4 NC_006151.1 + 138730 0.66 0.859938
Target:  5'- cGGGUcguGUaCGcGCGCCGCG-ACUGcCGCGc -3'
miRNA:   3'- aCCCG---UA-GU-CGCGGUGUuUGAC-GCGC- -5'
29429 3' -56.4 NC_006151.1 + 137140 0.66 0.844023
Target:  5'- cGGcGCGacgCGGCGCCGgAGAUggccGCGCa -3'
miRNA:   3'- aCC-CGUa--GUCGCGGUgUUUGa---CGCGc -5'
29429 3' -56.4 NC_006151.1 + 136991 0.68 0.782528
Target:  5'- cGGGCGgcgGGCGCgCGCGcACgGCGCu -3'
miRNA:   3'- aCCCGUag-UCGCG-GUGUuUGaCGCGc -5'
29429 3' -56.4 NC_006151.1 + 136940 0.68 0.763581
Target:  5'- cGGGCGccgaCGGCGCCGuc--CUGCGCc -3'
miRNA:   3'- aCCCGUa---GUCGCGGUguuuGACGCGc -5'
29429 3' -56.4 NC_006151.1 + 136422 0.7 0.652872
Target:  5'- gGGGCcccgCGGCGgCGCAcGCcGCGCGc -3'
miRNA:   3'- aCCCGua--GUCGCgGUGUuUGaCGCGC- -5'
29429 3' -56.4 NC_006151.1 + 135804 0.66 0.875011
Target:  5'- cGGGCGagcGCGCCGaggcCGAGCUuuuaGCGCGc -3'
miRNA:   3'- aCCCGUaguCGCGGU----GUUUGA----CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 135669 0.67 0.80989
Target:  5'- --cGCGUCcuguaCGCCACGgacGGCUGCGCGa -3'
miRNA:   3'- accCGUAGuc---GCGGUGU---UUGACGCGC- -5'
29429 3' -56.4 NC_006151.1 + 135327 0.68 0.748076
Target:  5'- aGGuGCAUgAGCGCCgccaggcacguguccGCGAGCcgccGCGCGu -3'
miRNA:   3'- aCC-CGUAgUCGCGG---------------UGUUUGa---CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 135108 0.72 0.529856
Target:  5'- cGGGCGgcggUAGCGCgCgggGCGGGCUGgGCGg -3'
miRNA:   3'- aCCCGUa---GUCGCG-G---UGUUUGACgCGC- -5'
29429 3' -56.4 NC_006151.1 + 134335 0.67 0.835766
Target:  5'- cGGGCAU---CGCCACGGAC-GUGCc -3'
miRNA:   3'- aCCCGUAgucGCGGUGUUUGaCGCGc -5'
29429 3' -56.4 NC_006151.1 + 133489 0.73 0.471341
Target:  5'- cGGGCGUCaccuuGGCGgCGCGGGggGCGCGg -3'
miRNA:   3'- aCCCGUAG-----UCGCgGUGUUUgaCGCGC- -5'
29429 3' -56.4 NC_006151.1 + 133167 0.68 0.753924
Target:  5'- cGGGCGUgGGCcucgGCCACGcgucccacGGCcGCGCa -3'
miRNA:   3'- aCCCGUAgUCG----CGGUGU--------UUGaCGCGc -5'
29429 3' -56.4 NC_006151.1 + 132291 0.71 0.601132
Target:  5'- cUGGGCcaccaccugGUCcgcgugcaGGCGCCACGAgaGCUcGCGCGc -3'
miRNA:   3'- -ACCCG---------UAG--------UCGCGGUGUU--UGA-CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 131964 0.66 0.874278
Target:  5'- cGGGCggCAGUacgugugGUCGCGGuACUcGCGCGa -3'
miRNA:   3'- aCCCGuaGUCG-------CGGUGUU-UGA-CGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.