miRNA display CGI


Results 1 - 20 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29429 5' -60.5 NC_006151.1 + 129804 0.66 0.732396
Target:  5'- cCCGcaugagGC-CCGUGAgcGCGGAgCGCGCGg -3'
miRNA:   3'- cGGCa-----CGaGGCGCUa-CGCCU-GCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 25113 0.66 0.732396
Target:  5'- -gCGUGCgagcgCUG-GgcGUGGACGCGCGa -3'
miRNA:   3'- cgGCACGa----GGCgCuaCGCCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 50636 0.66 0.732396
Target:  5'- cGCCucgGCgacggCCGCGG-GCGGACccgagucguGCGCGg -3'
miRNA:   3'- -CGGca-CGa----GGCGCUaCGCCUG---------CGCGU- -5'
29429 5' -60.5 NC_006151.1 + 54103 0.66 0.732396
Target:  5'- gGCCaUGUcggCUGCGAcggcggcggcUGCGGACGgGCu -3'
miRNA:   3'- -CGGcACGa--GGCGCU----------ACGCCUGCgCGu -5'
29429 5' -60.5 NC_006151.1 + 86482 0.66 0.732396
Target:  5'- cGCaCGUggcGCUCUGCGugaucggGCGG-CGCGUg -3'
miRNA:   3'- -CG-GCA---CGAGGCGCua-----CGCCuGCGCGu -5'
29429 5' -60.5 NC_006151.1 + 4862 0.66 0.732396
Target:  5'- cCCG-GCgCCGCcGUaGCGGACGCGg- -3'
miRNA:   3'- cGGCaCGaGGCGcUA-CGCCUGCGCgu -5'
29429 5' -60.5 NC_006151.1 + 64319 0.66 0.72571
Target:  5'- cGCCGUGCuggccucgcaccacgUCgGCGGgaagcGCGGGCcgucggccccccaGCGCAc -3'
miRNA:   3'- -CGGCACG---------------AGgCGCUa----CGCCUG-------------CGCGU- -5'
29429 5' -60.5 NC_006151.1 + 75966 0.66 0.722833
Target:  5'- cGCuCGUGCUUCGUGAggaagaagGUGucguCGCGCAc -3'
miRNA:   3'- -CG-GCACGAGGCGCUa-------CGCcu--GCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 4603 0.66 0.722833
Target:  5'- aGCCGUGg-CCGUGGggcgcGUGGACccgGCGCu -3'
miRNA:   3'- -CGGCACgaGGCGCUa----CGCCUG---CGCGu -5'
29429 5' -60.5 NC_006151.1 + 71958 0.66 0.722833
Target:  5'- gGCCGccucgGCguugUCGCGGUGCGGcGgGgGCAg -3'
miRNA:   3'- -CGGCa----CGa---GGCGCUACGCC-UgCgCGU- -5'
29429 5' -60.5 NC_006151.1 + 96861 0.66 0.722833
Target:  5'- aCCGcGC-CCGCcggGCGcGGCGCGCGc -3'
miRNA:   3'- cGGCaCGaGGCGcuaCGC-CUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 38294 0.66 0.722833
Target:  5'- cGCCGagGCcgCCGCGcgGCccGGGCcCGCGg -3'
miRNA:   3'- -CGGCa-CGa-GGCGCuaCG--CCUGcGCGU- -5'
29429 5' -60.5 NC_006151.1 + 98291 0.66 0.722833
Target:  5'- cGCCGUcGCcaCgGUGGUGCaGuCGCGCAu -3'
miRNA:   3'- -CGGCA-CGa-GgCGCUACGcCuGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 118090 0.66 0.722833
Target:  5'- cGCCGaucgaggcgcUGCgCCGCGAccUGCuGGcgcugcucgugGCGCGCAg -3'
miRNA:   3'- -CGGC----------ACGaGGCGCU--ACG-CC-----------UGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 118142 0.66 0.722833
Target:  5'- cGCCGacgacgCCGCG--GCGGugGCGCc -3'
miRNA:   3'- -CGGCacga--GGCGCuaCGCCugCGCGu -5'
29429 5' -60.5 NC_006151.1 + 17385 0.66 0.721872
Target:  5'- aCCGUG-UCCGCacgacggGgcGCGuGGCGCGCGg -3'
miRNA:   3'- cGGCACgAGGCG-------CuaCGC-CUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 102680 0.66 0.713196
Target:  5'- cGCCGUGga-CGCGGgggcgcccggcGCGGGCgGCGCGg -3'
miRNA:   3'- -CGGCACgagGCGCUa----------CGCCUG-CGCGU- -5'
29429 5' -60.5 NC_006151.1 + 102918 0.66 0.713196
Target:  5'- cGCUG-GCggCCGcCGAggaGCGGcuGCGCGCGc -3'
miRNA:   3'- -CGGCaCGa-GGC-GCUa--CGCC--UGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 106881 0.66 0.713196
Target:  5'- gGCCGUgacGCUgUGCGAccUGCGcGAcccCGCGCu -3'
miRNA:   3'- -CGGCA---CGAgGCGCU--ACGC-CU---GCGCGu -5'
29429 5' -60.5 NC_006151.1 + 101652 0.66 0.713196
Target:  5'- cGCCGUGC-CCGCGcucuacggcGUGGGCGagaCGUAc -3'
miRNA:   3'- -CGGCACGaGGCGCua-------CGCCUGC---GCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.