miRNA display CGI


Results 1 - 20 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29429 5' -60.5 NC_006151.1 + 141404 0.68 0.594789
Target:  5'- cGgCGUG-UCCGgcgauCGGUGCGGGCGCGg- -3'
miRNA:   3'- -CgGCACgAGGC-----GCUACGCCUGCGCgu -5'
29429 5' -60.5 NC_006151.1 + 140299 0.68 0.575085
Target:  5'- cGCCG-GCgCCGCc-UGCgGGACGUGCGc -3'
miRNA:   3'- -CGGCaCGaGGCGcuACG-CCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 139815 0.72 0.353258
Target:  5'- cGCCGU-CUCCGCGAcGC--ACGCGCGg -3'
miRNA:   3'- -CGGCAcGAGGCGCUaCGccUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 139643 0.69 0.526591
Target:  5'- cGCCG-GCgcgggggUCGCG--GCGGGCGCGCc -3'
miRNA:   3'- -CGGCaCGa------GGCGCuaCGCCUGCGCGu -5'
29429 5' -60.5 NC_006151.1 + 139267 0.71 0.400967
Target:  5'- cCCGcgcGCUCCGacg-GCGGACGCGCc -3'
miRNA:   3'- cGGCa--CGAGGCgcuaCGCCUGCGCGu -5'
29429 5' -60.5 NC_006151.1 + 139076 0.74 0.296126
Target:  5'- aGCuCGgGCUCCGCc-UGgGGGCGCGCAu -3'
miRNA:   3'- -CG-GCaCGAGGCGcuACgCCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 138732 0.67 0.621542
Target:  5'- gGUCGUGUacgcgcgCCGCGAcUGCcgcgccuaccugugGGACGUGCAc -3'
miRNA:   3'- -CGGCACGa------GGCGCU-ACG--------------CCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 138609 0.66 0.713196
Target:  5'- cGCUGccGCUCgGCGAggacgccgccGgGGGCGCGCc -3'
miRNA:   3'- -CGGCa-CGAGgCGCUa---------CgCCUGCGCGu -5'
29429 5' -60.5 NC_006151.1 + 138421 0.68 0.604683
Target:  5'- aGCaGUGCUUCGCuacaaaGUGCGGcagcaacgcgACGCGCAc -3'
miRNA:   3'- -CGgCACGAGGCGc-----UACGCC----------UGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 137934 0.69 0.555533
Target:  5'- cGCC-UGCUCCcCuuUGgGGACGCGCc -3'
miRNA:   3'- -CGGcACGAGGcGcuACgCCUGCGCGu -5'
29429 5' -60.5 NC_006151.1 + 137269 0.67 0.664204
Target:  5'- cGCCcgGUGC-CCGCGGgcacgcucgagGCGGccAUGCGCGg -3'
miRNA:   3'- -CGG--CACGaGGCGCUa----------CGCC--UGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 137100 0.71 0.443726
Target:  5'- cGCgGUGCUggCCGgGGacgccUGgGGGCGCGCGa -3'
miRNA:   3'- -CGgCACGA--GGCgCU-----ACgCCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 137022 0.68 0.575085
Target:  5'- cGCCcUGCUCgGCc-UGcCGGACGCGUg -3'
miRNA:   3'- -CGGcACGAGgCGcuAC-GCCUGCGCGu -5'
29429 5' -60.5 NC_006151.1 + 136980 0.77 0.194267
Target:  5'- gGCCGccGCgCCGgGcgGCGGGCGCGCGc -3'
miRNA:   3'- -CGGCa-CGaGGCgCuaCGCCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 136826 0.74 0.302857
Target:  5'- cGCCGcgcggGCUCUGCGAcGCGGccgccggccucGCGCGCc -3'
miRNA:   3'- -CGGCa----CGAGGCGCUaCGCC-----------UGCGCGu -5'
29429 5' -60.5 NC_006151.1 + 136678 0.67 0.644381
Target:  5'- gGCCGccGCcuucuUCCGCcacGUGCGGGCGCaGCu -3'
miRNA:   3'- -CGGCa-CG-----AGGCGc--UACGCCUGCG-CGu -5'
29429 5' -60.5 NC_006151.1 + 136594 0.66 0.713196
Target:  5'- cGCgCG-GCUCCGCGA-GCaccuGGACGC-CGu -3'
miRNA:   3'- -CG-GCaCGAGGCGCUaCG----CCUGCGcGU- -5'
29429 5' -60.5 NC_006151.1 + 136092 0.69 0.555533
Target:  5'- cGCUGcGCUCCaucGCGGU-CGGGCGcCGCGg -3'
miRNA:   3'- -CGGCaCGAGG---CGCUAcGCCUGC-GCGU- -5'
29429 5' -60.5 NC_006151.1 + 135893 0.68 0.565287
Target:  5'- cCCGUGUUcgucgccgCCGCGAccccgGCGGucguGCGCGCGc -3'
miRNA:   3'- cGGCACGA--------GGCGCUa----CGCC----UGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 133643 0.69 0.526591
Target:  5'- gGCgGUGgUCCG-GGUGCGaGAgGCGCu -3'
miRNA:   3'- -CGgCACgAGGCgCUACGC-CUgCGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.