Results 1 - 20 of 99 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29430 | 5' | -58.2 | NC_006151.1 | + | 92890 | 1.08 | 0.001846 |
Target: 5'- aCACAUACCCCCGCCCCCGAACUACCAg -3' miRNA: 3'- -GUGUAUGGGGGCGGGGGCUUGAUGGU- -5' |
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29430 | 5' | -58.2 | NC_006151.1 | + | 44012 | 0.79 | 0.193769 |
Target: 5'- cCGCA-GCCCCCGCCCCgCGGGgaGCCGg -3' miRNA: 3'- -GUGUaUGGGGGCGGGG-GCUUgaUGGU- -5' |
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29430 | 5' | -58.2 | NC_006151.1 | + | 85 | 0.77 | 0.246915 |
Target: 5'- uGCAUAgCCCCGCCCCCucAUUugCAu -3' miRNA: 3'- gUGUAUgGGGGCGGGGGcuUGAugGU- -5' |
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29430 | 5' | -58.2 | NC_006151.1 | + | 8367 | 0.76 | 0.271347 |
Target: 5'- gCGCGagGCCCCCGCCCCCGGGgggguCCGg -3' miRNA: 3'- -GUGUa-UGGGGGCGGGGGCUUgau--GGU- -5' |
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29430 | 5' | -58.2 | NC_006151.1 | + | 14798 | 0.75 | 0.333339 |
Target: 5'- cCGCucgACCgCCCGCCCCCGAcCcACCGc -3' miRNA: 3'- -GUGua-UGG-GGGCGGGGGCUuGaUGGU- -5' |
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29430 | 5' | -58.2 | NC_006151.1 | + | 137042 | 0.75 | 0.318712 |
Target: 5'- aCGCGUGcCCCCCGgCgCCGGugUACCGc -3' miRNA: 3'- -GUGUAU-GGGGGCgGgGGCUugAUGGU- -5' |
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29430 | 5' | -58.2 | NC_006151.1 | + | 203 | 0.74 | 0.380119 |
Target: 5'- uGCAUAgCCCCGCCCCUucAUUugCAu -3' miRNA: 3'- gUGUAUgGGGGCGGGGGcuUGAugGU- -5' |
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29430 | 5' | -58.2 | NC_006151.1 | + | 38337 | 0.74 | 0.35619 |
Target: 5'- gGCcUGCCCCCGCUcuggCCCGAGCaGCCc -3' miRNA: 3'- gUGuAUGGGGGCGG----GGGCUUGaUGGu -5' |
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29430 | 5' | -58.2 | NC_006151.1 | + | 42582 | 0.73 | 0.413656 |
Target: 5'- cCACGcGCCgCCCGUCCCCGAGagGCCu -3' miRNA: 3'- -GUGUaUGG-GGGCGGGGGCUUgaUGGu -5' |
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29430 | 5' | -58.2 | NC_006151.1 | + | 41532 | 0.73 | 0.396659 |
Target: 5'- aGCGgaaGCCCCCGCCCgCGGACccCCGg -3' miRNA: 3'- gUGUa--UGGGGGCGGGgGCUUGauGGU- -5' |
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29430 | 5' | -58.2 | NC_006151.1 | + | 109069 | 0.73 | 0.439972 |
Target: 5'- aGCAgccgUCCCCGCCCCCGGAgUcgGCCc -3' miRNA: 3'- gUGUau--GGGGGCGGGGGCUUgA--UGGu -5' |
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29430 | 5' | -58.2 | NC_006151.1 | + | 107100 | 0.73 | 0.431093 |
Target: 5'- gCGCGUGCUCUgggCGCCgCCCGAGCcGCCGc -3' miRNA: 3'- -GUGUAUGGGG---GCGG-GGGCUUGaUGGU- -5' |
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29430 | 5' | -58.2 | NC_006151.1 | + | 107363 | 0.73 | 0.42232 |
Target: 5'- cCGCGg--CCCCGaUCCCCGGGCUGCCc -3' miRNA: 3'- -GUGUaugGGGGC-GGGGGCUUGAUGGu -5' |
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29430 | 5' | -58.2 | NC_006151.1 | + | 50898 | 0.73 | 0.439972 |
Target: 5'- cCGCGc-CCCCCGCCUCCuguuGCUACCGc -3' miRNA: 3'- -GUGUauGGGGGCGGGGGcu--UGAUGGU- -5' |
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29430 | 5' | -58.2 | NC_006151.1 | + | 82531 | 0.72 | 0.448953 |
Target: 5'- gCGCGUgucguugagcGCCCCCaGCCCgCCGAGCUggaagacgaACCAc -3' miRNA: 3'- -GUGUA----------UGGGGG-CGGG-GGCUUGA---------UGGU- -5' |
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29430 | 5' | -58.2 | NC_006151.1 | + | 50017 | 0.72 | 0.448953 |
Target: 5'- gCGCGcgGCCCgcgcggCGCCCCCGGGCgcgGCCAu -3' miRNA: 3'- -GUGUa-UGGGg-----GCGGGGGCUUGa--UGGU- -5' |
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29430 | 5' | -58.2 | NC_006151.1 | + | 121473 | 0.72 | 0.485852 |
Target: 5'- gGCAaGCgCCCGCCCCCGGaggACgACCu -3' miRNA: 3'- gUGUaUGgGGGCGGGGGCU---UGaUGGu -5' |
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29430 | 5' | -58.2 | NC_006151.1 | + | 6845 | 0.71 | 0.514447 |
Target: 5'- uGCAUG-CCCgGCCCCCGcGGCgGCCAu -3' miRNA: 3'- gUGUAUgGGGgCGGGGGC-UUGaUGGU- -5' |
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29430 | 5' | -58.2 | NC_006151.1 | + | 131598 | 0.71 | 0.543703 |
Target: 5'- gGCAaaUGCCCCC-CCUCCGGGCcgGCCc -3' miRNA: 3'- gUGU--AUGGGGGcGGGGGCUUGa-UGGu -5' |
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29430 | 5' | -58.2 | NC_006151.1 | + | 130976 | 0.71 | 0.543703 |
Target: 5'- --gGUACCCCgGCCgCCCGGGCUgaaACUg -3' miRNA: 3'- gugUAUGGGGgCGG-GGGCUUGA---UGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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