Results 1 - 20 of 164 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29443 | 3' | -57.6 | NC_006151.1 | + | 79047 | 1.08 | 0.002212 |
Target: 5'- cACACAUCCGCCCCGAAGCCCGAGAACc -3' miRNA: 3'- -UGUGUAGGCGGGGCUUCGGGCUCUUG- -5' |
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29443 | 3' | -57.6 | NC_006151.1 | + | 27158 | 0.78 | 0.228627 |
Target: 5'- uCACGUCgGCCCCGAGGCgCCGcgugucGGGGCg -3' miRNA: 3'- uGUGUAGgCGGGGCUUCG-GGC------UCUUG- -5' |
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29443 | 3' | -57.6 | NC_006151.1 | + | 88387 | 0.78 | 0.21776 |
Target: 5'- aGCGCGUCCGCggcguccgcggCCgCGAGGCCCGGGAc- -3' miRNA: 3'- -UGUGUAGGCG-----------GG-GCUUCGGGCUCUug -5' |
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29443 | 3' | -57.6 | NC_006151.1 | + | 130270 | 0.77 | 0.257805 |
Target: 5'- gGCGCG-CgGCCCCGAGGCCgCGGGcGCg -3' miRNA: 3'- -UGUGUaGgCGGGGCUUCGG-GCUCuUG- -5' |
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29443 | 3' | -57.6 | NC_006151.1 | + | 122410 | 0.77 | 0.251735 |
Target: 5'- gGCGCucgCCGCCguggacgccgCCGAGGCCCGGGAGg -3' miRNA: 3'- -UGUGua-GGCGG----------GGCUUCGGGCUCUUg -5' |
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29443 | 3' | -57.6 | NC_006151.1 | + | 107556 | 0.76 | 0.283284 |
Target: 5'- gGCGCcgCCGCCCgCcAAGCCCGcGGAGCu -3' miRNA: 3'- -UGUGuaGGCGGG-GcUUCGGGC-UCUUG- -5' |
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29443 | 3' | -57.6 | NC_006151.1 | + | 32330 | 0.76 | 0.296753 |
Target: 5'- cCGCGUCCccauCUCCGAGGCCCGAGGc- -3' miRNA: 3'- uGUGUAGGc---GGGGCUUCGGGCUCUug -5' |
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29443 | 3' | -57.6 | NC_006151.1 | + | 19478 | 0.75 | 0.347009 |
Target: 5'- gGCAgGUagucgccgaugccCCGCUCCGggGCCuCGGGGACg -3' miRNA: 3'- -UGUgUA-------------GGCGGGGCuuCGG-GCUCUUG- -5' |
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29443 | 3' | -57.6 | NC_006151.1 | + | 8306 | 0.75 | 0.355562 |
Target: 5'- cCGCGUcCCGCCCCGA-GCCCccGGGGCg -3' miRNA: 3'- uGUGUA-GGCGGGGCUuCGGGc-UCUUG- -5' |
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29443 | 3' | -57.6 | NC_006151.1 | + | 107849 | 0.74 | 0.396279 |
Target: 5'- -gGCGaCgGCCCCGgcGCCCGAGAc- -3' miRNA: 3'- ugUGUaGgCGGGGCuuCGGGCUCUug -5' |
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29443 | 3' | -57.6 | NC_006151.1 | + | 81349 | 0.74 | 0.379635 |
Target: 5'- cCGCcgCCGCgCCCGggGCcCCGGcGGGCg -3' miRNA: 3'- uGUGuaGGCG-GGGCuuCG-GGCU-CUUG- -5' |
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29443 | 3' | -57.6 | NC_006151.1 | + | 56226 | 0.74 | 0.404776 |
Target: 5'- cCugGUgCGCCCCGAGGaCCCGAcGGAg -3' miRNA: 3'- uGugUAgGCGGGGCUUC-GGGCU-CUUg -5' |
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29443 | 3' | -57.6 | NC_006151.1 | + | 22843 | 0.74 | 0.371491 |
Target: 5'- aGCGCG-CUGCCCagGAAGCCCaGGAGCa -3' miRNA: 3'- -UGUGUaGGCGGGg-CUUCGGGcUCUUG- -5' |
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29443 | 3' | -57.6 | NC_006151.1 | + | 52186 | 0.73 | 0.448925 |
Target: 5'- cGCGCGaacgCgGCCCCGAagAGCUCgGAGAGCg -3' miRNA: 3'- -UGUGUa---GgCGGGGCU--UCGGG-CUCUUG- -5' |
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29443 | 3' | -57.6 | NC_006151.1 | + | 96604 | 0.73 | 0.413386 |
Target: 5'- gGCGCGggCGCgCCGAcgucguGCCCGAGGGCg -3' miRNA: 3'- -UGUGUagGCGgGGCUu-----CGGGCUCUUG- -5' |
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29443 | 3' | -57.6 | NC_006151.1 | + | 105292 | 0.73 | 0.422109 |
Target: 5'- cGCGCggCCGCgCCGgcGCcuCCGAGGACg -3' miRNA: 3'- -UGUGuaGGCGgGGCuuCG--GGCUCUUG- -5' |
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29443 | 3' | -57.6 | NC_006151.1 | + | 66882 | 0.73 | 0.458071 |
Target: 5'- gGCGCGcCCgGCCCCGc-GCCgGAGGACg -3' miRNA: 3'- -UGUGUaGG-CGGGGCuuCGGgCUCUUG- -5' |
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29443 | 3' | -57.6 | NC_006151.1 | + | 5933 | 0.73 | 0.439881 |
Target: 5'- gGCcCGgagCCGgCCCGGgaccggGGCCCGAGGACg -3' miRNA: 3'- -UGuGUa--GGCgGGGCU------UCGGGCUCUUG- -5' |
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29443 | 3' | -57.6 | NC_006151.1 | + | 107613 | 0.73 | 0.439881 |
Target: 5'- gGCGCcgCCGCCCgCcAAGCCCGuGGAg -3' miRNA: 3'- -UGUGuaGGCGGG-GcUUCGGGCuCUUg -5' |
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29443 | 3' | -57.6 | NC_006151.1 | + | 106585 | 0.73 | 0.439881 |
Target: 5'- gGCGCugugGUCCGCCCUGcAGCCgGAGGcgaACg -3' miRNA: 3'- -UGUG----UAGGCGGGGCuUCGGgCUCU---UG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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