miRNA display CGI


Results 41 - 60 of 620 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29443 5' -65.7 NC_006151.1 + 5118 0.78 0.084636
Target:  5'- gCGgCCCgGCGCGgGCGAGUGgGGCGCc -3'
miRNA:   3'- gGCgGGGgCGCGCgCGCUCGC-UCGCG- -5'
29443 5' -65.7 NC_006151.1 + 96861 0.78 0.086755
Target:  5'- aCCGCgCCCGcCGgGCGCG-GCGcGCGCg -3'
miRNA:   3'- -GGCGgGGGC-GCgCGCGCuCGCuCGCG- -5'
29443 5' -65.7 NC_006151.1 + 119063 0.78 0.088923
Target:  5'- gCCGCCUCCGCGgGCGCGcccgucucgcaGGCcgcGGCGCu -3'
miRNA:   3'- -GGCGGGGGCGCgCGCGC-----------UCGc--UCGCG- -5'
29443 5' -65.7 NC_006151.1 + 106381 0.78 0.091143
Target:  5'- cCCGCCgcggcgCCCGCuGCGCGaCGGGCaGGCGCu -3'
miRNA:   3'- -GGCGG------GGGCG-CGCGC-GCUCGcUCGCG- -5'
29443 5' -65.7 NC_006151.1 + 114920 0.78 0.091143
Target:  5'- aCgGCCCCgGCGuCGCGCucggccuccgGGGUGGGCGCg -3'
miRNA:   3'- -GgCGGGGgCGC-GCGCG----------CUCGCUCGCG- -5'
29443 5' -65.7 NC_006151.1 + 59335 0.78 0.091143
Target:  5'- cCCGCCCCCaGCGCGCucaGGGCcGcGCGCa -3'
miRNA:   3'- -GGCGGGGG-CGCGCGcg-CUCG-CuCGCG- -5'
29443 5' -65.7 NC_006151.1 + 82662 0.77 0.093416
Target:  5'- gCgGCCCaCCcugcgGCGCGcCGCGGGCGAGgGCg -3'
miRNA:   3'- -GgCGGG-GG-----CGCGC-GCGCUCGCUCgCG- -5'
29443 5' -65.7 NC_006151.1 + 35208 0.77 0.093416
Target:  5'- aCGCCUCCGCGCGCccauuggccCGGGCGAGC-Cg -3'
miRNA:   3'- gGCGGGGGCGCGCGc--------GCUCGCUCGcG- -5'
29443 5' -65.7 NC_006151.1 + 103529 0.77 0.093416
Target:  5'- uCCGaCCCCG-GCGCGCuGGUGGGCGCc -3'
miRNA:   3'- -GGCgGGGGCgCGCGCGcUCGCUCGCG- -5'
29443 5' -65.7 NC_006151.1 + 78514 0.77 0.095743
Target:  5'- aCGCCCCCGCGauCGCGgacccGGCGGGgGCc -3'
miRNA:   3'- gGCGGGGGCGCgcGCGC-----UCGCUCgCG- -5'
29443 5' -65.7 NC_006151.1 + 54801 0.77 0.097404
Target:  5'- -aGCCCCgGCaccggcgcgugcugGCGCGCGAcgcgcucacggGCGAGCGCg -3'
miRNA:   3'- ggCGGGGgCG--------------CGCGCGCU-----------CGCUCGCG- -5'
29443 5' -65.7 NC_006151.1 + 136980 0.77 0.098124
Target:  5'- -gGCCgCCGCGcCGgGCG-GCGGGCGCg -3'
miRNA:   3'- ggCGGgGGCGC-GCgCGCuCGCUCGCG- -5'
29443 5' -65.7 NC_006151.1 + 58723 0.77 0.100561
Target:  5'- gCGCCCCCGUGCcgcuCGCGucGCGcAGCGCc -3'
miRNA:   3'- gGCGGGGGCGCGc---GCGCu-CGC-UCGCG- -5'
29443 5' -65.7 NC_006151.1 + 59717 0.77 0.100561
Target:  5'- aCUGCUCCCGCGUcacgGgGUuGGCGAGCGCg -3'
miRNA:   3'- -GGCGGGGGCGCG----CgCGcUCGCUCGCG- -5'
29443 5' -65.7 NC_006151.1 + 52366 0.77 0.101551
Target:  5'- uCCGCCggcgcgcccccggggCCCGCGgGgGCG-GCGGGCGCc -3'
miRNA:   3'- -GGCGG---------------GGGCGCgCgCGCuCGCUCGCG- -5'
29443 5' -65.7 NC_006151.1 + 122004 0.77 0.102301
Target:  5'- gCCGCuUCCaCGCGCGCGuCGcgcucgacacguacGGCGGGCGCg -3'
miRNA:   3'- -GGCG-GGG-GCGCGCGC-GC--------------UCGCUCGCG- -5'
29443 5' -65.7 NC_006151.1 + 59506 0.77 0.105607
Target:  5'- gCgGCCUCCGCGaCGCGCGcGC-AGCGCc -3'
miRNA:   3'- -GgCGGGGGCGC-GCGCGCuCGcUCGCG- -5'
29443 5' -65.7 NC_006151.1 + 69452 0.77 0.105607
Target:  5'- gCGUCCUCGCGCGcCGCGGGCGccGGCa- -3'
miRNA:   3'- gGCGGGGGCGCGC-GCGCUCGC--UCGcg -5'
29443 5' -65.7 NC_006151.1 + 53979 0.77 0.108219
Target:  5'- gCGCCUCCGCGgGCGuCGcGGCGAGCu- -3'
miRNA:   3'- gGCGGGGGCGCgCGC-GC-UCGCUCGcg -5'
29443 5' -65.7 NC_006151.1 + 66565 0.77 0.108219
Target:  5'- gCCGCCguggacccggcgCUCGCGCGCGCGGcCGAGgCGCu -3'
miRNA:   3'- -GGCGG------------GGGCGCGCGCGCUcGCUC-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.