miRNA display CGI


Results 21 - 40 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29446 5' -64.7 NC_006151.1 + 104260 0.73 0.181912
Target:  5'- cCCGagaacGCcGGCGCggCGGCGGGCCCGcCg -3'
miRNA:   3'- aGGC-----CGuCCGCGa-GCCGCUCGGGCaG- -5'
29446 5' -64.7 NC_006151.1 + 90993 0.73 0.181912
Target:  5'- gCUGGCuGGCGCgcuccagcaCGGCGGuCCCGUCg -3'
miRNA:   3'- aGGCCGuCCGCGa--------GCCGCUcGGGCAG- -5'
29446 5' -64.7 NC_006151.1 + 64214 0.73 0.200016
Target:  5'- gUCCGGCguGGGCGcCUCGGCGuacagGGCCgCGa- -3'
miRNA:   3'- -AGGCCG--UCCGC-GAGCCGC-----UCGG-GCag -5'
29446 5' -64.7 NC_006151.1 + 54698 0.73 0.200016
Target:  5'- gCCGGCAGcGUGCUgGGCcaGGGCCUGg- -3'
miRNA:   3'- aGGCCGUC-CGCGAgCCG--CUCGGGCag -5'
29446 5' -64.7 NC_006151.1 + 3133 0.72 0.204781
Target:  5'- gCCgGGCgcgGGGCGCccUCGGCGGGCUCGg- -3'
miRNA:   3'- aGG-CCG---UCCGCG--AGCCGCUCGGGCag -5'
29446 5' -64.7 NC_006151.1 + 10559 0.72 0.204781
Target:  5'- cCCGGCGcccaauggcgcGGCcgGCUCGGCG-GCCCGg- -3'
miRNA:   3'- aGGCCGU-----------CCG--CGAGCCGCuCGGGCag -5'
29446 5' -64.7 NC_006151.1 + 68765 0.72 0.209153
Target:  5'- gCCGGCGguGGCGCgcgCGGCGAggugcgccgccgcGgCCGUCa -3'
miRNA:   3'- aGGCCGU--CCGCGa--GCCGCU-------------CgGGCAG- -5'
29446 5' -64.7 NC_006151.1 + 64493 0.72 0.214605
Target:  5'- gCCcGCGGGCGCgggCGGCGGGCgCG-Cg -3'
miRNA:   3'- aGGcCGUCCGCGa--GCCGCUCGgGCaG- -5'
29446 5' -64.7 NC_006151.1 + 131728 0.72 0.214605
Target:  5'- -gUGGUAGGCGgggUGGCGGGCCCGg- -3'
miRNA:   3'- agGCCGUCCGCga-GCCGCUCGGGCag -5'
29446 5' -64.7 NC_006151.1 + 55035 0.72 0.218139
Target:  5'- cCCGGCcGGCGCcguggagaagaugcUCGGCGAGgaCCCGg- -3'
miRNA:   3'- aGGCCGuCCGCG--------------AGCCGCUC--GGGCag -5'
29446 5' -64.7 NC_006151.1 + 76818 0.72 0.219668
Target:  5'- --gGGCGGGCGCguagUGGCG-GCCCG-Cg -3'
miRNA:   3'- aggCCGUCCGCGa---GCCGCuCGGGCaG- -5'
29446 5' -64.7 NC_006151.1 + 134054 0.72 0.228508
Target:  5'- cCCGGCGgaggagaccauccuGGUGUgugCGaGCGAGCCCGUg -3'
miRNA:   3'- aGGCCGU--------------CCGCGa--GC-CGCUCGGGCAg -5'
29446 5' -64.7 NC_006151.1 + 69972 0.72 0.230099
Target:  5'- gCCGcGCGGGCGCUgcagCGGCG-GCagCGUCa -3'
miRNA:   3'- aGGC-CGUCCGCGA----GCCGCuCGg-GCAG- -5'
29446 5' -64.7 NC_006151.1 + 97371 0.72 0.235469
Target:  5'- -gCGGCGGGCGCggcgggGGCGucGGCCuCGUCc -3'
miRNA:   3'- agGCCGUCCGCGag----CCGC--UCGG-GCAG- -5'
29446 5' -64.7 NC_006151.1 + 24474 0.71 0.239291
Target:  5'- cUCGG-GGGCGUUggucucgaugguccCGGCGAGCCCGUa -3'
miRNA:   3'- aGGCCgUCCGCGA--------------GCCGCUCGGGCAg -5'
29446 5' -64.7 NC_006151.1 + 3453 0.71 0.240944
Target:  5'- gUCgGGCgcgGGGUGCUCGGgcaUGGGCCCGa- -3'
miRNA:   3'- -AGgCCG---UCCGCGAGCC---GCUCGGGCag -5'
29446 5' -64.7 NC_006151.1 + 54993 0.71 0.240944
Target:  5'- gCCGGUgaAGGUGCUCgucgGGCGcaAGCCCGcCg -3'
miRNA:   3'- aGGCCG--UCCGCGAG----CCGC--UCGGGCaG- -5'
29446 5' -64.7 NC_006151.1 + 6476 0.71 0.245962
Target:  5'- cUCUGGCGGGCcgagagcCUCGGUGGGUcgggcguCCGUCg -3'
miRNA:   3'- -AGGCCGUCCGc------GAGCCGCUCG-------GGCAG- -5'
29446 5' -64.7 NC_006151.1 + 3973 0.71 0.246525
Target:  5'- -gCGGC-GGC-CUCGGCGAGCCgGcCg -3'
miRNA:   3'- agGCCGuCCGcGAGCCGCUCGGgCaG- -5'
29446 5' -64.7 NC_006151.1 + 106685 0.71 0.246525
Target:  5'- cUCGGCgcgccGGGCGC-CGGCGAccuguacgcGCCCGUg -3'
miRNA:   3'- aGGCCG-----UCCGCGaGCCGCU---------CGGGCAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.