miRNA display CGI


Results 1 - 20 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29446 5' -64.7 NC_006151.1 + 141626 0.66 0.510099
Target:  5'- aUCgGGCGGGuCGCUgccgcggcggcgCGGCGGGgcCCCG-Cg -3'
miRNA:   3'- -AGgCCGUCC-GCGA------------GCCGCUC--GGGCaG- -5'
29446 5' -64.7 NC_006151.1 + 141410 0.71 0.263912
Target:  5'- gUCCGGCGaucGGUGCg-GGCGcGGCCCGg- -3'
miRNA:   3'- -AGGCCGU---CCGCGagCCGC-UCGGGCag -5'
29446 5' -64.7 NC_006151.1 + 139637 0.74 0.157477
Target:  5'- aUCCGGCGccGGCGCgggggucgCGGCGGGCgCGcCg -3'
miRNA:   3'- -AGGCCGU--CCGCGa-------GCCGCUCGgGCaG- -5'
29446 5' -64.7 NC_006151.1 + 138154 0.68 0.404485
Target:  5'- aCCGGCGcGCGCUCgaggccuucguGGCGGacguggccauggcGCCCGUg -3'
miRNA:   3'- aGGCCGUcCGCGAG-----------CCGCU-------------CGGGCAg -5'
29446 5' -64.7 NC_006151.1 + 136994 0.68 0.40042
Target:  5'- -gCGGCGGGCGCgcgcgcaCGGCGcugggcgcccugcucGGCCUGcCg -3'
miRNA:   3'- agGCCGUCCGCGa------GCCGC---------------UCGGGCaG- -5'
29446 5' -64.7 NC_006151.1 + 135916 0.69 0.350764
Target:  5'- cCCGGCGGucgugcgcGCGCUcugccgCGGgGAGCCCcUCg -3'
miRNA:   3'- aGGCCGUC--------CGCGA------GCCgCUCGGGcAG- -5'
29446 5' -64.7 NC_006151.1 + 135158 0.77 0.106213
Target:  5'- cCCGGCGGGCGCggccCGGaCGGGCgCCGg- -3'
miRNA:   3'- aGGCCGUCCGCGa---GCC-GCUCG-GGCag -5'
29446 5' -64.7 NC_006151.1 + 134990 0.67 0.430253
Target:  5'- cUCgGGCGGGCGCgucUUGGCGggGGCgCGg- -3'
miRNA:   3'- -AGgCCGUCCGCG---AGCCGC--UCGgGCag -5'
29446 5' -64.7 NC_006151.1 + 134054 0.72 0.228508
Target:  5'- cCCGGCGgaggagaccauccuGGUGUgugCGaGCGAGCCCGUg -3'
miRNA:   3'- aGGCCGU--------------CCGCGa--GC-CGCUCGGGCAg -5'
29446 5' -64.7 NC_006151.1 + 133670 0.67 0.438768
Target:  5'- gCCGGCGcggcGGCGCgcccccgaGGCGGuCUCGUCg -3'
miRNA:   3'- aGGCCGU----CCGCGag------CCGCUcGGGCAG- -5'
29446 5' -64.7 NC_006151.1 + 132039 0.66 0.510099
Target:  5'- gCCGGC-GGCGCgCGGC-AGCgCGg- -3'
miRNA:   3'- aGGCCGuCCGCGaGCCGcUCGgGCag -5'
29446 5' -64.7 NC_006151.1 + 131728 0.72 0.214605
Target:  5'- -gUGGUAGGCGgggUGGCGGGCCCGg- -3'
miRNA:   3'- agGCCGUCCGCga-GCCGCUCGGGCag -5'
29446 5' -64.7 NC_006151.1 + 131115 0.67 0.430253
Target:  5'- cCCGGCcgcGGCGCgggaggccgCGGCGccgcGgCCGUCa -3'
miRNA:   3'- aGGCCGu--CCGCGa--------GCCGCu---CgGGCAG- -5'
29446 5' -64.7 NC_006151.1 + 130946 0.66 0.482727
Target:  5'- -gCGGCGGGgGgUCGcGCGGGCgCGg- -3'
miRNA:   3'- agGCCGUCCgCgAGC-CGCUCGgGCag -5'
29446 5' -64.7 NC_006151.1 + 130307 0.66 0.486337
Target:  5'- -aCGGCGcggagcgcgcgcgccGcGCGCUCGGgGAGCUCG-Cg -3'
miRNA:   3'- agGCCGU---------------C-CGCGAGCCgCUCGGGCaG- -5'
29446 5' -64.7 NC_006151.1 + 129962 0.7 0.308328
Target:  5'- gCCGGCAcGCGCgagcgcaCGGCGcggaaGGCCuCGUCg -3'
miRNA:   3'- aGGCCGUcCGCGa------GCCGC-----UCGG-GCAG- -5'
29446 5' -64.7 NC_006151.1 + 129710 0.66 0.518438
Target:  5'- gCCGaGCAGGCaguugagcagcagGUUC-GCGGGCCCG-Cg -3'
miRNA:   3'- aGGC-CGUCCG-------------CGAGcCGCUCGGGCaG- -5'
29446 5' -64.7 NC_006151.1 + 129434 0.76 0.111641
Target:  5'- gUCCGGCcccaagugggcgGGGCGCaCGGCcgugggcgggacGAGCCCGUCc -3'
miRNA:   3'- -AGGCCG------------UCCGCGaGCCG------------CUCGGGCAG- -5'
29446 5' -64.7 NC_006151.1 + 129398 0.71 0.269925
Target:  5'- cUCUGGguGGCGCgcggcguauUCGGCGAGgUCGa- -3'
miRNA:   3'- -AGGCCguCCGCG---------AGCCGCUCgGGCag -5'
29446 5' -64.7 NC_006151.1 + 128787 0.66 0.5009
Target:  5'- -aCGGCcucGGuCGcCUCGGCGAGCgCGg- -3'
miRNA:   3'- agGCCGu--CC-GC-GAGCCGCUCGgGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.