miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29448 5' -50.1 NC_006151.1 + 143101 0.66 0.993722
Target:  5'- aGggGGAUUggGGuuGGCAGGGaGCcaagGUAGg -3'
miRNA:   3'- aCuuCUUGAa-CU--UCGUCCC-CGa---CAUC- -5'
29448 5' -50.1 NC_006151.1 + 88868 0.66 0.992725
Target:  5'- -cGGGAGCUccgGgcGCGGGGGCUcGUc- -3'
miRNA:   3'- acUUCUUGAa--CuuCGUCCCCGA-CAuc -5'
29448 5' -50.1 NC_006151.1 + 27009 0.66 0.991606
Target:  5'- -cGAGAGC-UGGAGCAGGGcCUGc-- -3'
miRNA:   3'- acUUCUUGaACUUCGUCCCcGACauc -5'
29448 5' -50.1 NC_006151.1 + 34396 0.66 0.990354
Target:  5'- aGAGGggUgggGGAGaggaGGGGGUggGUGGg -3'
miRNA:   3'- aCUUCuuGaa-CUUCg---UCCCCGa-CAUC- -5'
29448 5' -50.1 NC_006151.1 + 143066 0.67 0.988961
Target:  5'- gUGggGGAUUggGGuuGGCAGGGuGCcaggGUAGg -3'
miRNA:   3'- -ACuuCUUGAa-CU--UCGUCCC-CGa---CAUC- -5'
29448 5' -50.1 NC_006151.1 + 27301 0.67 0.988513
Target:  5'- uUGggGGGCgugGggGUcgaggcgggggacgGGGGGCUGc-- -3'
miRNA:   3'- -ACuuCUUGaa-CuuCG--------------UCCCCGACauc -5'
29448 5' -50.1 NC_006151.1 + 110656 0.67 0.988052
Target:  5'- gGggGGACUUGggGgGauuGGGGCccaaagacgcggcgGUGGg -3'
miRNA:   3'- aCuuCUUGAACuuCgU---CCCCGa-------------CAUC- -5'
29448 5' -50.1 NC_006151.1 + 45030 0.67 0.987415
Target:  5'- aGAAgcGAAUggggGAAGCguGGGGGgUGUGGg -3'
miRNA:   3'- aCUU--CUUGaa--CUUCG--UCCCCgACAUC- -5'
29448 5' -50.1 NC_006151.1 + 9550 0.67 0.987415
Target:  5'- aGAAGAAacgggGAAGCGGGGGaaGg-- -3'
miRNA:   3'- aCUUCUUgaa--CUUCGUCCCCgaCauc -5'
29448 5' -50.1 NC_006151.1 + 49523 0.67 0.983829
Target:  5'- cGGAGGACgaggagGggGgAGGGGg-GUGGg -3'
miRNA:   3'- aCUUCUUGaa----CuuCgUCCCCgaCAUC- -5'
29448 5' -50.1 NC_006151.1 + 105020 0.67 0.981769
Target:  5'- gGAGGAGCUggUGAcGCAGGcGGCg---- -3'
miRNA:   3'- aCUUCUUGA--ACUuCGUCC-CCGacauc -5'
29448 5' -50.1 NC_006151.1 + 96095 0.67 0.981769
Target:  5'- cGAAGAGCaUG-AGC-GGGGUUGcGGg -3'
miRNA:   3'- aCUUCUUGaACuUCGuCCCCGACaUC- -5'
29448 5' -50.1 NC_006151.1 + 44781 0.68 0.977067
Target:  5'- -aGAGAGCggggaGAAGCGGGGGgUGa-- -3'
miRNA:   3'- acUUCUUGaa---CUUCGUCCCCgACauc -5'
29448 5' -50.1 NC_006151.1 + 20132 0.68 0.977067
Target:  5'- cUGggGGGCgggcGccGCGGGGGCggcgcGUGGa -3'
miRNA:   3'- -ACuuCUUGaa--CuuCGUCCCCGa----CAUC- -5'
29448 5' -50.1 NC_006151.1 + 3814 0.68 0.974406
Target:  5'- cUGGAGcugGACUUGGugcuGGC-GGGGCUGgAGg -3'
miRNA:   3'- -ACUUC---UUGAACU----UCGuCCCCGACaUC- -5'
29448 5' -50.1 NC_006151.1 + 141457 0.68 0.974406
Target:  5'- aGGAGGGCggucUGGAGcCGGGGGCg---- -3'
miRNA:   3'- aCUUCUUGa---ACUUC-GUCCCCGacauc -5'
29448 5' -50.1 NC_006151.1 + 27554 0.68 0.971528
Target:  5'- gGggGGGCUgggcUGGGaCGGGGGCcggGUGGg -3'
miRNA:   3'- aCuuCUUGA----ACUUcGUCCCCGa--CAUC- -5'
29448 5' -50.1 NC_006151.1 + 19233 0.68 0.968746
Target:  5'- aGAAGAGCUgcgagugGAAGCcgagcgcguggaagcGGGGCUcGUGGc -3'
miRNA:   3'- aCUUCUUGAa------CUUCGu--------------CCCCGA-CAUC- -5'
29448 5' -50.1 NC_006151.1 + 12399 0.69 0.961511
Target:  5'- aGAgcgGGAAC-UGGAGaGGGGGCUGggugGGg -3'
miRNA:   3'- aCU---UCUUGaACUUCgUCCCCGACa---UC- -5'
29448 5' -50.1 NC_006151.1 + 3164 0.69 0.949281
Target:  5'- cGcAGAGCUccucgUGggGCAGcGGGUcGUAGa -3'
miRNA:   3'- aCuUCUUGA-----ACuuCGUC-CCCGaCAUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.