miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29449 3' -56.9 NC_006151.1 + 130717 0.71 0.594578
Target:  5'- gCGgC-CCGGggGC-CCGCGCGGCCg- -3'
miRNA:   3'- -GCaGaGGUCuuUGuGGUGCGCCGGga -5'
29449 3' -56.9 NC_006151.1 + 117781 0.71 0.60473
Target:  5'- aGgCUCCGGGcggGGCGCCACGCccggcggggcggGGCCCc -3'
miRNA:   3'- gCaGAGGUCU---UUGUGGUGCG------------CCGGGa -5'
29449 3' -56.9 NC_006151.1 + 103278 0.71 0.614901
Target:  5'- aCGUgCUgagCCAgGAGACGCgCGCGCGGCUCg -3'
miRNA:   3'- -GCA-GA---GGU-CUUUGUG-GUGCGCCGGGa -5'
29449 3' -56.9 NC_006151.1 + 42572 0.7 0.635274
Target:  5'- -cUCUCCG---GCGCCACGCGccGCCCg -3'
miRNA:   3'- gcAGAGGUcuuUGUGGUGCGC--CGGGa -5'
29449 3' -56.9 NC_006151.1 + 133322 0.7 0.635274
Target:  5'- cCGUgUCgAGgcGCGCCGgGCGGCCg- -3'
miRNA:   3'- -GCAgAGgUCuuUGUGGUgCGCCGGga -5'
29449 3' -56.9 NC_006151.1 + 120325 0.7 0.645461
Target:  5'- aGcCUCUc-GGACGCCGCGCGcGCCCg -3'
miRNA:   3'- gCaGAGGucUUUGUGGUGCGC-CGGGa -5'
29449 3' -56.9 NC_006151.1 + 78784 0.7 0.655638
Target:  5'- cCGcCUUCGGcGACucGCC-CGCGGCCCUc -3'
miRNA:   3'- -GCaGAGGUCuUUG--UGGuGCGCCGGGA- -5'
29449 3' -56.9 NC_006151.1 + 28595 0.7 0.675926
Target:  5'- gCGUCcCCGGAGGCggguGCCGCGgGGUUCg -3'
miRNA:   3'- -GCAGaGGUCUUUG----UGGUGCgCCGGGa -5'
29449 3' -56.9 NC_006151.1 + 128576 0.7 0.675926
Target:  5'- gCGcCUCgGGcGACAucgucUCGCGCGGCCCg -3'
miRNA:   3'- -GCaGAGgUCuUUGU-----GGUGCGCCGGGa -5'
29449 3' -56.9 NC_006151.1 + 28876 0.7 0.675926
Target:  5'- gCGUCcCCGGAGGCggguGCCGCGgGGUUCg -3'
miRNA:   3'- -GCAGaGGUCUUUG----UGGUGCgCCGGGa -5'
29449 3' -56.9 NC_006151.1 + 52169 0.69 0.686022
Target:  5'- gCGUCUCgaAGGGcgcGCGCgcgaACGCGGCCCc -3'
miRNA:   3'- -GCAGAGg-UCUU---UGUGg---UGCGCCGGGa -5'
29449 3' -56.9 NC_006151.1 + 119082 0.69 0.696073
Target:  5'- cCGUCUCgCAGGccgcggcgcucGGCgcguacgugaGCCGCGCGGCCg- -3'
miRNA:   3'- -GCAGAG-GUCU-----------UUG----------UGGUGCGCCGGga -5'
29449 3' -56.9 NC_006151.1 + 91406 0.69 0.696073
Target:  5'- aCGUUgcCCAGGAACACgGCcuGgGGCCCg -3'
miRNA:   3'- -GCAGa-GGUCUUUGUGgUG--CgCCGGGa -5'
29449 3' -56.9 NC_006151.1 + 79257 0.69 0.696073
Target:  5'- uCGUC-CCGGcgcggucucGACGCCGCGCGGCguCCg -3'
miRNA:   3'- -GCAGaGGUCu--------UUGUGGUGCGCCG--GGa -5'
29449 3' -56.9 NC_006151.1 + 46672 0.69 0.706071
Target:  5'- --aCUCCGGAGGCGCCAUcguccggcgaGgGGUCCUc -3'
miRNA:   3'- gcaGAGGUCUUUGUGGUG----------CgCCGGGA- -5'
29449 3' -56.9 NC_006151.1 + 139817 0.69 0.716007
Target:  5'- cCGUCUCCGc-GACGCaCGCGCGGgUCg -3'
miRNA:   3'- -GCAGAGGUcuUUGUG-GUGCGCCgGGa -5'
29449 3' -56.9 NC_006151.1 + 36810 0.69 0.716007
Target:  5'- cCGUCgCCGucGAGACcgucGCC-CGCGGCCCc -3'
miRNA:   3'- -GCAGaGGU--CUUUG----UGGuGCGCCGGGa -5'
29449 3' -56.9 NC_006151.1 + 5510 0.69 0.716007
Target:  5'- aCGgggCUCCGG--GCGCCAaGCGGCCg- -3'
miRNA:   3'- -GCa--GAGGUCuuUGUGGUgCGCCGGga -5'
29449 3' -56.9 NC_006151.1 + 17952 0.69 0.723906
Target:  5'- gCGUCUCCGGcgcccgccugccGGCGucCCACGCGGCgCa -3'
miRNA:   3'- -GCAGAGGUCu-----------UUGU--GGUGCGCCGgGa -5'
29449 3' -56.9 NC_006151.1 + 109090 0.69 0.725873
Target:  5'- aGUCggccCCGGAGGCccagugaggcgaGCCGC-CGGCCCg -3'
miRNA:   3'- gCAGa---GGUCUUUG------------UGGUGcGCCGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.