miRNA display CGI


Results 21 - 40 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29449 5' -62.9 NC_006151.1 + 81261 0.71 0.314304
Target:  5'- gGCAGGGCgaGCAGcgCCUCGGcGGGGa -3'
miRNA:   3'- -CGUCCCGgcUGUCuaGGGGCC-CCCUg -5'
29449 5' -62.9 NC_006151.1 + 3614 0.71 0.314304
Target:  5'- cGCGGuGGCCGugGccGUCCCCGcGGaGGGCc -3'
miRNA:   3'- -CGUC-CCGGCugUc-UAGGGGC-CC-CCUG- -5'
29449 5' -62.9 NC_006151.1 + 28308 0.71 0.314304
Target:  5'- ---uGGCCGGCGcGUCCCCGGGGcGCc -3'
miRNA:   3'- cgucCCGGCUGUcUAGGGGCCCCcUG- -5'
29449 5' -62.9 NC_006151.1 + 135030 0.71 0.328294
Target:  5'- aGCGGGGCCG-CGucGUCCUCGGGGcGGu -3'
miRNA:   3'- -CGUCCCGGCuGUc-UAGGGGCCCC-CUg -5'
29449 5' -62.9 NC_006151.1 + 76788 0.71 0.342739
Target:  5'- cGCAgucGGcGCCGuACAGcgCCCCGGcGaGGGCg -3'
miRNA:   3'- -CGU---CC-CGGC-UGUCuaGGGGCC-C-CCUG- -5'
29449 5' -62.9 NC_006151.1 + 8249 0.71 0.342739
Target:  5'- gGCcGGGCCGGCgcgccgGGAcgcccCUCCGGGGGAa -3'
miRNA:   3'- -CGuCCCGGCUG------UCUa----GGGGCCCCCUg -5'
29449 5' -62.9 NC_006151.1 + 74561 0.7 0.350132
Target:  5'- -uGGGGCUGguugcccaGCGGGUCCCCGGGcaGCg -3'
miRNA:   3'- cgUCCCGGC--------UGUCUAGGGGCCCccUG- -5'
29449 5' -62.9 NC_006151.1 + 55434 0.7 0.360671
Target:  5'- gGCGGGcGCgGACGGGaccggcgccgccggCCCCgccGGGGGGCg -3'
miRNA:   3'- -CGUCC-CGgCUGUCUa-------------GGGG---CCCCCUG- -5'
29449 5' -62.9 NC_006151.1 + 90666 0.7 0.364488
Target:  5'- cGCGGGG-CGGCGGGccgcuugUCCCCcgcggcGGGGGCg -3'
miRNA:   3'- -CGUCCCgGCUGUCU-------AGGGGc-----CCCCUG- -5'
29449 5' -62.9 NC_006151.1 + 140104 0.7 0.365254
Target:  5'- -gAGGGCCuGACGGAgucccucgCCUCGGcGGACg -3'
miRNA:   3'- cgUCCCGG-CUGUCUa-------GGGGCCcCCUG- -5'
29449 5' -62.9 NC_006151.1 + 33959 0.7 0.372983
Target:  5'- uCGGGGCgGgacGCGGcgCCCgCGcGGGGACa -3'
miRNA:   3'- cGUCCCGgC---UGUCuaGGG-GC-CCCCUG- -5'
29449 5' -62.9 NC_006151.1 + 9692 0.7 0.372983
Target:  5'- cGCccGGCCG-CGGGUgCCCGGGaGACg -3'
miRNA:   3'- -CGucCCGGCuGUCUAgGGGCCCcCUG- -5'
29449 5' -62.9 NC_006151.1 + 5762 0.7 0.380822
Target:  5'- cCGGGcucaCCGAcCGGGUCCCCccucgcGGGGGACc -3'
miRNA:   3'- cGUCCc---GGCU-GUCUAGGGG------CCCCCUG- -5'
29449 5' -62.9 NC_006151.1 + 28237 0.7 0.380822
Target:  5'- gGCcGGGCCGACGGG-CCCauuGGccGGGGCc -3'
miRNA:   3'- -CGuCCCGGCUGUCUaGGGg--CC--CCCUG- -5'
29449 5' -62.9 NC_006151.1 + 2367 0.69 0.419107
Target:  5'- cGCAGaaggcgcgcaacucGGCCGGCAGGcCCUCGGGGccGCg -3'
miRNA:   3'- -CGUC--------------CCGGCUGUCUaGGGGCCCCc-UG- -5'
29449 5' -62.9 NC_006151.1 + 133285 0.69 0.421629
Target:  5'- gGCGGcGGCCcACGucGAgguucUCCCCGGGGG-Cg -3'
miRNA:   3'- -CGUC-CCGGcUGU--CU-----AGGGGCCCCCuG- -5'
29449 5' -62.9 NC_006151.1 + 141643 0.69 0.421629
Target:  5'- cGCGGcGGCgCGGCGGggCCCCGcGGG-Cu -3'
miRNA:   3'- -CGUC-CCG-GCUGUCuaGGGGCcCCCuG- -5'
29449 5' -62.9 NC_006151.1 + 41719 0.69 0.427549
Target:  5'- -aGGGGCCGGCgcgauaugcagaugAGAUCCgUGGGGaccGGCg -3'
miRNA:   3'- cgUCCCGGCUG--------------UCUAGGgGCCCC---CUG- -5'
29449 5' -62.9 NC_006151.1 + 41656 0.69 0.427549
Target:  5'- -aGGGGCCGGCgcgauaugcagaugAGAUCCgUGGGGaccGGCg -3'
miRNA:   3'- cgUCCCGGCUG--------------UCUAGGgGCCCC---CUG- -5'
29449 5' -62.9 NC_006151.1 + 113110 0.69 0.430101
Target:  5'- gGCGGGGCCGcggacGCGGAcgCCgCCGGGcccGGCu -3'
miRNA:   3'- -CGUCCCGGC-----UGUCUa-GG-GGCCCc--CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.