miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29449 5' -62.9 NC_006151.1 + 141643 0.69 0.421629
Target:  5'- cGCGGcGGCgCGGCGGggCCCCGcGGG-Cu -3'
miRNA:   3'- -CGUC-CCG-GCUGUCuaGGGGCcCCCuG- -5'
29449 5' -62.9 NC_006151.1 + 141062 0.66 0.616007
Target:  5'- uCAGGGaaacaCGACAGAcUCCCGGagcaccGGGAg -3'
miRNA:   3'- cGUCCCg----GCUGUCUaGGGGCC------CCCUg -5'
29449 5' -62.9 NC_006151.1 + 140104 0.7 0.365254
Target:  5'- -gAGGGCCuGACGGAgucccucgCCUCGGcGGACg -3'
miRNA:   3'- cgUCCCGG-CUGUCUa-------GGGGCCcCCUG- -5'
29449 5' -62.9 NC_006151.1 + 137916 0.67 0.518894
Target:  5'- gGCGGcGGCUGccACGGGcgccugcUCCCCuuuGGGGACg -3'
miRNA:   3'- -CGUC-CCGGC--UGUCU-------AGGGGc--CCCCUG- -5'
29449 5' -62.9 NC_006151.1 + 135137 0.67 0.529231
Target:  5'- gGCGGGGaCgGGCAGAcccagCCCGGcGGGCg -3'
miRNA:   3'- -CGUCCC-GgCUGUCUag---GGGCCcCCUG- -5'
29449 5' -62.9 NC_006151.1 + 135087 0.72 0.287691
Target:  5'- gGCGGGGgCGGCGGGg--CCGGGcGGGCg -3'
miRNA:   3'- -CGUCCCgGCUGUCUaggGGCCC-CCUG- -5'
29449 5' -62.9 NC_006151.1 + 135030 0.71 0.328294
Target:  5'- aGCGGGGCCG-CGucGUCCUCGGGGcGGu -3'
miRNA:   3'- -CGUCCCGGCuGUc-UAGGGGCCCC-CUg -5'
29449 5' -62.9 NC_006151.1 + 133285 0.69 0.421629
Target:  5'- gGCGGcGGCCcACGucGAgguucUCCCCGGGGG-Cg -3'
miRNA:   3'- -CGUC-CCGGcUGU--CU-----AGGGGCCCCCuG- -5'
29449 5' -62.9 NC_006151.1 + 131077 0.68 0.501231
Target:  5'- cGgAGGGCgcgCGACAGGuagUCCacgucggCGGGGGGCc -3'
miRNA:   3'- -CgUCCCG---GCUGUCU---AGGg------GCCCCCUG- -5'
29449 5' -62.9 NC_006151.1 + 130679 0.74 0.19882
Target:  5'- cGCGGGGCgCGGCgcaGGAUgUCCGGGGGcCc -3'
miRNA:   3'- -CGUCCCG-GCUG---UCUAgGGGCCCCCuG- -5'
29449 5' -62.9 NC_006151.1 + 129468 0.66 0.606239
Target:  5'- gGCGGGacgagcCCGucCAGGUCCUCGGaGGGCa -3'
miRNA:   3'- -CGUCCc-----GGCu-GUCUAGGGGCCcCCUG- -5'
29449 5' -62.9 NC_006151.1 + 129317 0.72 0.287691
Target:  5'- gGCGGaGGCagaGGCGGGUuagcggCCCCGGGGcGGCc -3'
miRNA:   3'- -CGUC-CCGg--CUGUCUA------GGGGCCCC-CUG- -5'
29449 5' -62.9 NC_006151.1 + 129180 0.79 0.098416
Target:  5'- cGCAGGGCCGccacggccgccgucaGCAccUCCCCGGGGGcCg -3'
miRNA:   3'- -CGUCCCGGC---------------UGUcuAGGGGCCCCCuG- -5'
29449 5' -62.9 NC_006151.1 + 127390 0.67 0.529231
Target:  5'- gGCGGGGgccgcggccgagUCGACGGGagCCCGcGGGGuCg -3'
miRNA:   3'- -CGUCCC------------GGCUGUCUagGGGC-CCCCuG- -5'
29449 5' -62.9 NC_006151.1 + 122937 0.73 0.245437
Target:  5'- cGCGGacGCCGACGGcggcgCCgCGGGGGGCg -3'
miRNA:   3'- -CGUCc-CGGCUGUCua---GGgGCCCCCUG- -5'
29449 5' -62.9 NC_006151.1 + 121912 0.67 0.557786
Target:  5'- cGCGcGGGCCGAgGGGgaCCgCGugcuGGGGGCg -3'
miRNA:   3'- -CGU-CCCGGCUgUCUa-GGgGC----CCCCUG- -5'
29449 5' -62.9 NC_006151.1 + 121430 0.66 0.606239
Target:  5'- cGCGGGGCuCGcgccggccucGCuGGUgCCCgcggagcuGGGGGGCa -3'
miRNA:   3'- -CGUCCCG-GC----------UGuCUAgGGG--------CCCCCUG- -5'
29449 5' -62.9 NC_006151.1 + 113110 0.69 0.430101
Target:  5'- gGCGGGGCCGcggacGCGGAcgCCgCCGGGcccGGCu -3'
miRNA:   3'- -CGUCCCGGC-----UGUCUa-GG-GGCCCc--CUG- -5'
29449 5' -62.9 NC_006151.1 + 112072 0.74 0.208464
Target:  5'- gGUGGGGCUGGUGGAgcUCCCCGGGucGGGCg -3'
miRNA:   3'- -CGUCCCGGCUGUCU--AGGGGCCC--CCUG- -5'
29449 5' -62.9 NC_006151.1 + 110687 0.66 0.586762
Target:  5'- cGCGGcGGUgGGgAGAUCggggaaagaCCGGGGGAa -3'
miRNA:   3'- -CGUC-CCGgCUgUCUAGg--------GGCCCCCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.