Results 41 - 60 of 430 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29458 | 3' | -65.5 | NC_006151.1 | + | 5366 | 0.75 | 0.133066 |
Target: 5'- cGGCGCcgGCGGGGCUgucucugcggGGGCgcccCGCCGuCCc -3' miRNA: 3'- -CCGCG--UGCCCCGG----------CCCGa---GCGGCuGG- -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 21509 | 0.75 | 0.133066 |
Target: 5'- gGGCGuCAcCGGGG-CGGGCUCGggcuUCGGCCg -3' miRNA: 3'- -CCGC-GU-GCCCCgGCCCGAGC----GGCUGG- -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 135092 | 0.75 | 0.133066 |
Target: 5'- gGGCG-GCGGGGCCGGGCg-GgCGGCg -3' miRNA: 3'- -CCGCgUGCCCCGGCCCGagCgGCUGg -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 4317 | 0.75 | 0.136308 |
Target: 5'- cGGgGCACGcGGCCGGGCUgCGCggCGGCg -3' miRNA: 3'- -CCgCGUGCcCCGGCCCGA-GCG--GCUGg -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 113126 | 0.75 | 0.143009 |
Target: 5'- cGGaCGcCGCcGGGCCcGGCUaCGCCGACCu -3' miRNA: 3'- -CC-GC-GUGcCCCGGcCCGA-GCGGCUGG- -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 123910 | 0.75 | 0.146472 |
Target: 5'- cGGCGCggcggccgugACGcGGGCCGccucGGcCUCGCCGACg -3' miRNA: 3'- -CCGCG----------UGC-CCCGGC----CC-GAGCGGCUGg -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 20141 | 0.75 | 0.146472 |
Target: 5'- gGGCGcCGCGGGGgCGGcGCguggacCGCCgGGCCg -3' miRNA: 3'- -CCGC-GUGCCCCgGCC-CGa-----GCGG-CUGG- -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 3966 | 0.75 | 0.146472 |
Target: 5'- gGGcCGCGCGGcGGCCucGGCgaGCCGGCCg -3' miRNA: 3'- -CC-GCGUGCC-CCGGc-CCGagCGGCUGG- -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 96388 | 0.75 | 0.150011 |
Target: 5'- cGCGCGCGGuGCCGGcGCaCGgCGGCCg -3' miRNA: 3'- cCGCGUGCCcCGGCC-CGaGCgGCUGG- -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 18693 | 0.74 | 0.153627 |
Target: 5'- gGGCGCGCGGGcggcGCCGGcGUcgugaCGCCGuCCa -3' miRNA: 3'- -CCGCGUGCCC----CGGCC-CGa----GCGGCuGG- -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 122385 | 0.74 | 0.153627 |
Target: 5'- aGGCGCGcCGcGGGCgcgcgcuggCGGcGCUCGCCG-CCg -3' miRNA: 3'- -CCGCGU-GC-CCCG---------GCC-CGAGCGGCuGG- -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 69287 | 0.74 | 0.153627 |
Target: 5'- cGGCGCGCcaccaGGGacaCGGGC-CGCCGGCg -3' miRNA: 3'- -CCGCGUGc----CCCg--GCCCGaGCGGCUGg -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 64498 | 0.74 | 0.153627 |
Target: 5'- cGgGCGCGGGcGgCGGGCgcgCGCCG-CCa -3' miRNA: 3'- cCgCGUGCCC-CgGCCCGa--GCGGCuGG- -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 121088 | 0.74 | 0.157323 |
Target: 5'- gGGCG-GCGGcGCCGGGCU-GCaCGACCa -3' miRNA: 3'- -CCGCgUGCCcCGGCCCGAgCG-GCUGG- -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 105686 | 0.74 | 0.161098 |
Target: 5'- cGGCgGCGCGGGGCCGacgccGGCgcgGCCGcgcGCCu -3' miRNA: 3'- -CCG-CGUGCCCCGGC-----CCGag-CGGC---UGG- -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 4216 | 0.74 | 0.161098 |
Target: 5'- gGGCgGC-CGGGGCgCGGGCgggCGCgGGCa -3' miRNA: 3'- -CCG-CGuGCCCCG-GCCCGa--GCGgCUGg -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 60626 | 0.74 | 0.168895 |
Target: 5'- cGcCGCcgucguCGGGGCgGGGCUC-CCGGCCc -3' miRNA: 3'- cC-GCGu-----GCCCCGgCCCGAGcGGCUGG- -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 82617 | 0.74 | 0.168895 |
Target: 5'- cGCGCGCGGGcGCCGcGGUgggCGCgGgACCc -3' miRNA: 3'- cCGCGUGCCC-CGGC-CCGa--GCGgC-UGG- -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 105451 | 0.74 | 0.170495 |
Target: 5'- cGGCGCGCgccGGGGCCcuGGGCgacuucuuccgcgaCGCCGguGCCg -3' miRNA: 3'- -CCGCGUG---CCCCGG--CCCGa-------------GCGGC--UGG- -5' |
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29458 | 3' | -65.5 | NC_006151.1 | + | 22822 | 0.74 | 0.172919 |
Target: 5'- aGGUGCAgGGGGCgCGaGGCgagcgCGCUGcCCa -3' miRNA: 3'- -CCGCGUgCCCCG-GC-CCGa----GCGGCuGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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