miRNA display CGI


Results 1 - 20 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29459 3' -60.5 NC_006151.1 + 142325 0.7 0.483242
Target:  5'- --gGGcCCGCGCgCUcGCggCGCCCGCUu -3'
miRNA:   3'- ggaCCaGGCGCG-GA-CGuaGCGGGUGG- -5'
29459 3' -60.5 NC_006151.1 + 142137 0.68 0.61478
Target:  5'- -aUGGcgcCCGaUGCCUGCGccggcgcagggggcUCGUCCACCu -3'
miRNA:   3'- ggACCa--GGC-GCGGACGU--------------AGCGGGUGG- -5'
29459 3' -60.5 NC_006151.1 + 142086 0.66 0.710023
Target:  5'- aUCUGGUacgcCCGCaggaCCUGCGcgggcugggugaaGCCCACCg -3'
miRNA:   3'- -GGACCA----GGCGc---GGACGUag-----------CGGGUGG- -5'
29459 3' -60.5 NC_006151.1 + 141873 0.67 0.637506
Target:  5'- cUCUGGUgCCGgaggGCCggGCAUCGagcuCCACCu -3'
miRNA:   3'- -GGACCA-GGCg---CGGa-CGUAGCg---GGUGG- -5'
29459 3' -60.5 NC_006151.1 + 140343 0.7 0.49245
Target:  5'- aCUGGUgaUGCugGCUcGCAUCGCCCGCg -3'
miRNA:   3'- gGACCAg-GCG--CGGaCGUAGCGGGUGg -5'
29459 3' -60.5 NC_006151.1 + 140309 0.67 0.637506
Target:  5'- gCCUGcGggaCGUGCgCUGCAUCG-UCACCu -3'
miRNA:   3'- -GGAC-Cag-GCGCG-GACGUAGCgGGUGG- -5'
29459 3' -60.5 NC_006151.1 + 139911 0.67 0.686717
Target:  5'- --cGGcuUCCGCGCCgcggGCucGUCGCCgugggcCGCCg -3'
miRNA:   3'- ggaCC--AGGCGCGGa---CG--UAGCGG------GUGG- -5'
29459 3' -60.5 NC_006151.1 + 139569 0.69 0.520535
Target:  5'- gCCcGGUCCgcgaGCGCCUGgGcucgCGCCCcCCc -3'
miRNA:   3'- -GGaCCAGG----CGCGGACgUa---GCGGGuGG- -5'
29459 3' -60.5 NC_006151.1 + 138731 0.69 0.567649
Target:  5'- --gGGUCguguacgCGCGCCgcgacUGCcgCGCCUACCu -3'
miRNA:   3'- ggaCCAG-------GCGCGG-----ACGuaGCGGGUGG- -5'
29459 3' -60.5 NC_006151.1 + 138552 0.7 0.49245
Target:  5'- gCCUGGg-CGCGUacuacGCgaccGUCGCCCGCCu -3'
miRNA:   3'- -GGACCagGCGCGga---CG----UAGCGGGUGG- -5'
29459 3' -60.5 NC_006151.1 + 138309 0.7 0.51204
Target:  5'- --gGGUCCGCgcgcuucagcuGCCUGCGggcccggcacgcgcgCaGCCCGCCg -3'
miRNA:   3'- ggaCCAGGCG-----------CGGACGUa--------------G-CGGGUGG- -5'
29459 3' -60.5 NC_006151.1 + 137701 0.72 0.404515
Target:  5'- -aUGGgcuUCCGCGUgUGCA-CGCCCuGCCg -3'
miRNA:   3'- ggACC---AGGCGCGgACGUaGCGGG-UGG- -5'
29459 3' -60.5 NC_006151.1 + 137642 0.78 0.166226
Target:  5'- cCCUcGUCCGCGCCcccgucccgGCGgacgagCGCCCGCCg -3'
miRNA:   3'- -GGAcCAGGCGCGGa--------CGUa-----GCGGGUGG- -5'
29459 3' -60.5 NC_006151.1 + 137366 0.67 0.636518
Target:  5'- aCUGGgCCGCGCacccCUGCuacGUguacaagagcgccUGCCCGCCg -3'
miRNA:   3'- gGACCaGGCGCG----GACG---UA-------------GCGGGUGG- -5'
29459 3' -60.5 NC_006151.1 + 136977 0.68 0.598018
Target:  5'- gCUGGccgCCGCGCCggGCGgcgggCGCgCGCg -3'
miRNA:   3'- gGACCa--GGCGCGGa-CGUa----GCGgGUGg -5'
29459 3' -60.5 NC_006151.1 + 135459 0.69 0.520535
Target:  5'- gCCUGGUaggugCGCGCCaGCGU-GUCCGCg -3'
miRNA:   3'- -GGACCAg----GCGCGGaCGUAgCGGGUGg -5'
29459 3' -60.5 NC_006151.1 + 134608 0.68 0.627623
Target:  5'- cCCUGGagUCGgGCCagcGCGUgGCCCAgCu -3'
miRNA:   3'- -GGACCa-GGCgCGGa--CGUAgCGGGUgG- -5'
29459 3' -60.5 NC_006151.1 + 134321 0.66 0.725371
Target:  5'- gCUGcGcCuCGCGCCggGCAUCGCCacggacguGCCc -3'
miRNA:   3'- gGAC-CaG-GCGCGGa-CGUAGCGGg-------UGG- -5'
29459 3' -60.5 NC_006151.1 + 134071 0.66 0.715799
Target:  5'- uCCUGGUgUGUGCgaGCGa-GCCCgugACCg -3'
miRNA:   3'- -GGACCAgGCGCGgaCGUagCGGG---UGG- -5'
29459 3' -60.5 NC_006151.1 + 132301 0.76 0.232649
Target:  5'- aCCUGGUCCGCGUgcagGCGccacgagagcUCGCgCGCCg -3'
miRNA:   3'- -GGACCAGGCGCGga--CGU----------AGCGgGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.