miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29459 5' -54.8 NC_006151.1 + 141824 0.7 0.761871
Target:  5'- gGGCCGGUUCgggggucccGCGCuCGACGcgagGGGCu -3'
miRNA:   3'- gUCGGCCAAGa--------UGCG-GUUGCa---CCUGu -5'
29459 5' -54.8 NC_006151.1 + 133341 0.76 0.441488
Target:  5'- gCGGCCGGUUCcGCGgCGGCgGUGGugGu -3'
miRNA:   3'- -GUCGGCCAAGaUGCgGUUG-CACCugU- -5'
29459 5' -54.8 NC_006151.1 + 123930 0.66 0.930541
Target:  5'- gGGCCGccUCggccuCGCCGACGcccgGGACGg -3'
miRNA:   3'- gUCGGCcaAGau---GCGGUUGCa---CCUGU- -5'
29459 5' -54.8 NC_006151.1 + 123332 0.68 0.858616
Target:  5'- aGGCCacGGUgCaGCGCCAcccCGUGGACGc -3'
miRNA:   3'- gUCGG--CCAaGaUGCGGUu--GCACCUGU- -5'
29459 5' -54.8 NC_006151.1 + 123020 0.73 0.578587
Target:  5'- -cGCCGGcgg-ACGCCGugGCGUGGGCGg -3'
miRNA:   3'- guCGGCCaagaUGCGGU--UGCACCUGU- -5'
29459 5' -54.8 NC_006151.1 + 122403 0.66 0.935638
Target:  5'- -cGCUGGcggcgCU-CGCCGcCGUGGACGc -3'
miRNA:   3'- guCGGCCaa---GAuGCGGUuGCACCUGU- -5'
29459 5' -54.8 NC_006151.1 + 120099 0.87 0.094005
Target:  5'- cCAGCCGGUgCUGCGCCGccGCGUGGugGa -3'
miRNA:   3'- -GUCGGCCAaGAUGCGGU--UGCACCugU- -5'
29459 5' -54.8 NC_006151.1 + 113133 0.68 0.848311
Target:  5'- -cGCCGGgcccggCUACGCCGACcucgccaugcugcuGcUGGGCAa -3'
miRNA:   3'- guCGGCCaa----GAUGCGGUUG--------------C-ACCUGU- -5'
29459 5' -54.8 NC_006151.1 + 104110 0.72 0.619865
Target:  5'- gCGGCCGaGUUCgUGCGCCugcgcGACGUGG-CGg -3'
miRNA:   3'- -GUCGGC-CAAG-AUGCGG-----UUGCACCuGU- -5'
29459 5' -54.8 NC_006151.1 + 103685 0.66 0.935638
Target:  5'- gCGGCgGGggugCUgcGCGCCGcCGUGGAgCAc -3'
miRNA:   3'- -GUCGgCCaa--GA--UGCGGUuGCACCU-GU- -5'
29459 5' -54.8 NC_006151.1 + 97696 0.71 0.702328
Target:  5'- cCAGCCGGUcUUGCGUC-ACGUGGcCc -3'
miRNA:   3'- -GUCGGCCAaGAUGCGGuUGCACCuGu -5'
29459 5' -54.8 NC_006151.1 + 97471 0.67 0.881022
Target:  5'- gCAGgCGGcUCacCGCC-ACGUGGACGc -3'
miRNA:   3'- -GUCgGCCaAGauGCGGuUGCACCUGU- -5'
29459 5' -54.8 NC_006151.1 + 96599 0.67 0.881022
Target:  5'- -cGCCGGgcgCgggcGCGCCGACGUcgugcccgaGGGCGc -3'
miRNA:   3'- guCGGCCaa-Ga---UGCGGUUGCA---------CCUGU- -5'
29459 5' -54.8 NC_006151.1 + 92280 0.72 0.671609
Target:  5'- -cGCCacauGggCUACGCCuACGUGGACGu -3'
miRNA:   3'- guCGGc---CaaGAUGCGGuUGCACCUGU- -5'
29459 5' -54.8 NC_006151.1 + 89377 0.66 0.940491
Target:  5'- ---gCGGUUUUaaaaacGCGCgAGCGUGGGCGu -3'
miRNA:   3'- gucgGCCAAGA------UGCGgUUGCACCUGU- -5'
29459 5' -54.8 NC_006151.1 + 88153 0.66 0.919612
Target:  5'- aGGCCGGggugCUccgcgcagGCGCCGAgGUGGuagACGg -3'
miRNA:   3'- gUCGGCCaa--GA--------UGCGGUUgCACC---UGU- -5'
29459 5' -54.8 NC_006151.1 + 87280 0.66 0.930541
Target:  5'- cCAGCCGGggCUgcacGCGCCGccccccucgccCGUGGcGCAc -3'
miRNA:   3'- -GUCGGCCaaGA----UGCGGUu----------GCACC-UGU- -5'
29459 5' -54.8 NC_006151.1 + 85628 0.68 0.858616
Target:  5'- -cGCCGccgCgcgGCGCCAGCGgGGACGc -3'
miRNA:   3'- guCGGCcaaGa--UGCGGUUGCaCCUGU- -5'
29459 5' -54.8 NC_006151.1 + 85073 0.67 0.907706
Target:  5'- aGGCCuGcgg-GCGCCuguACGUGGGCAa -3'
miRNA:   3'- gUCGGcCaagaUGCGGu--UGCACCUGU- -5'
29459 5' -54.8 NC_006151.1 + 83638 0.7 0.761871
Target:  5'- gCGGCCuGGUgCUGCGCCGugACGaGGGCc -3'
miRNA:   3'- -GUCGG-CCAaGAUGCGGU--UGCaCCUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.