Results 21 - 40 of 47 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29460 | 3' | -54.6 | NC_006151.1 | + | 21472 | 0.68 | 0.841887 |
Target: 5'- -cCCGCGUC-GCCggCUcGGGcAGGCGGCc -3' miRNA: 3'- aaGGUGUAGuCGGa-GA-CCU-UCUGCCG- -5' |
|||||||
29460 | 3' | -54.6 | NC_006151.1 | + | 3999 | 0.68 | 0.833464 |
Target: 5'- -gCCACGUUGGCCgggGcGAAGAgGGCc -3' miRNA: 3'- aaGGUGUAGUCGGagaC-CUUCUgCCG- -5' |
|||||||
29460 | 3' | -54.6 | NC_006151.1 | + | 36858 | 0.68 | 0.824849 |
Target: 5'- ---gAC-UCGGCCUCgccGggGACGGCg -3' miRNA: 3'- aaggUGuAGUCGGAGac-CuuCUGCCG- -5' |
|||||||
29460 | 3' | -54.6 | NC_006151.1 | + | 99197 | 0.68 | 0.824849 |
Target: 5'- -gCCACG--GGCgUgUGGGAGGCGGUg -3' miRNA: 3'- aaGGUGUagUCGgAgACCUUCUGCCG- -5' |
|||||||
29460 | 3' | -54.6 | NC_006151.1 | + | 109928 | 0.68 | 0.824849 |
Target: 5'- cUCCGCcgcCGGCCUCUccccuGGGCGGCc -3' miRNA: 3'- aAGGUGua-GUCGGAGAccu--UCUGCCG- -5' |
|||||||
29460 | 3' | -54.6 | NC_006151.1 | + | 40408 | 0.69 | 0.816049 |
Target: 5'- gUCCGCGgcggCGGCCUCgguccccucGGcccGGCGGCg -3' miRNA: 3'- aAGGUGUa---GUCGGAGa--------CCuu-CUGCCG- -5' |
|||||||
29460 | 3' | -54.6 | NC_006151.1 | + | 28161 | 0.69 | 0.816049 |
Target: 5'- aUCCcCGUCGGCgUCguuGGGGCGGCg -3' miRNA: 3'- aAGGuGUAGUCGgAGaccUUCUGCCG- -5' |
|||||||
29460 | 3' | -54.6 | NC_006151.1 | + | 106176 | 0.69 | 0.815159 |
Target: 5'- -aCCGCGUCGcgcacccGCCgCUGGAGccGGCGGUg -3' miRNA: 3'- aaGGUGUAGU-------CGGaGACCUU--CUGCCG- -5' |
|||||||
29460 | 3' | -54.6 | NC_006151.1 | + | 133086 | 0.69 | 0.807073 |
Target: 5'- -aCCACcgCGGCCUgCaGGAAG-CGGUc -3' miRNA: 3'- aaGGUGuaGUCGGA-GaCCUUCuGCCG- -5' |
|||||||
29460 | 3' | -54.6 | NC_006151.1 | + | 39789 | 0.69 | 0.779182 |
Target: 5'- -aCCGCG-CGGCCaaccgCUGGggGcuCGGCg -3' miRNA: 3'- aaGGUGUaGUCGGa----GACCuuCu-GCCG- -5' |
|||||||
29460 | 3' | -54.6 | NC_006151.1 | + | 64530 | 0.69 | 0.779182 |
Target: 5'- -gCCGCcgCGGCCgCgucGggGGCGGCg -3' miRNA: 3'- aaGGUGuaGUCGGaGac-CuuCUGCCG- -5' |
|||||||
29460 | 3' | -54.6 | NC_006151.1 | + | 131097 | 0.69 | 0.769595 |
Target: 5'- gUCCACGUCggcggggggcccGGCCgcggCgcgGGAGGccGCGGCg -3' miRNA: 3'- aAGGUGUAG------------UCGGa---Ga--CCUUC--UGCCG- -5' |
|||||||
29460 | 3' | -54.6 | NC_006151.1 | + | 114931 | 0.7 | 0.730055 |
Target: 5'- -gUCGCGcUCGGCCUCcGG-GGugGGCg -3' miRNA: 3'- aaGGUGU-AGUCGGAGaCCuUCugCCG- -5' |
|||||||
29460 | 3' | -54.6 | NC_006151.1 | + | 103974 | 0.7 | 0.730055 |
Target: 5'- --gCGCGUCGGCgagCUGGA-GGCGGCc -3' miRNA: 3'- aagGUGUAGUCGga-GACCUuCUGCCG- -5' |
|||||||
29460 | 3' | -54.6 | NC_006151.1 | + | 14201 | 0.7 | 0.72094 |
Target: 5'- gUCgGCAUCGGCCUCgacgacgacgaucgcGGGAcccGACGGUa -3' miRNA: 3'- aAGgUGUAGUCGGAGa--------------CCUU---CUGCCG- -5' |
|||||||
29460 | 3' | -54.6 | NC_006151.1 | + | 53714 | 0.7 | 0.719923 |
Target: 5'- -cCCGCGgaAGCCgaacucCUGGAAGAUGGUg -3' miRNA: 3'- aaGGUGUagUCGGa-----GACCUUCUGCCG- -5' |
|||||||
29460 | 3' | -54.6 | NC_006151.1 | + | 18146 | 0.7 | 0.719923 |
Target: 5'- gUCCAUGUCGGCgg--GGgcGGCGGCg -3' miRNA: 3'- aAGGUGUAGUCGgagaCCuuCUGCCG- -5' |
|||||||
29460 | 3' | -54.6 | NC_006151.1 | + | 127998 | 0.71 | 0.709711 |
Target: 5'- cUCCGCGUCgcGGUCgcgGGgcGGCGGCg -3' miRNA: 3'- aAGGUGUAG--UCGGagaCCuuCUGCCG- -5' |
|||||||
29460 | 3' | -54.6 | NC_006151.1 | + | 55130 | 0.71 | 0.709711 |
Target: 5'- -gCCACAUCGGCgacaUCacGGAGACGGUg -3' miRNA: 3'- aaGGUGUAGUCGg---AGacCUUCUGCCG- -5' |
|||||||
29460 | 3' | -54.6 | NC_006151.1 | + | 21362 | 0.71 | 0.709711 |
Target: 5'- cUCCGCGggcugCGGCCacccgCUGGGcacGACGGCc -3' miRNA: 3'- aAGGUGUa----GUCGGa----GACCUu--CUGCCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home