miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29460 5' -59 NC_006151.1 + 62194 1.08 0.001307
Target:  5'- cUGGCCGUGUUCACGCUGCUGGCGCUGg -3'
miRNA:   3'- -ACCGGCACAAGUGCGACGACCGCGAC- -5'
29460 5' -59 NC_006151.1 + 119992 0.77 0.212494
Target:  5'- cUGGCgCG-GcgCACGCUGCUGGCGgUGc -3'
miRNA:   3'- -ACCG-GCaCaaGUGCGACGACCGCgAC- -5'
29460 5' -59 NC_006151.1 + 103038 0.76 0.228627
Target:  5'- gGGCCuG-GUUCGCGCUGCUGGCcgagGCg- -3'
miRNA:   3'- aCCGG-CaCAAGUGCGACGACCG----CGac -5'
29460 5' -59 NC_006151.1 + 112602 0.75 0.257805
Target:  5'- aGGCCGccgcgGCGCcGCUGGCGCUGg -3'
miRNA:   3'- aCCGGCacaagUGCGaCGACCGCGAC- -5'
29460 5' -59 NC_006151.1 + 86683 0.74 0.310715
Target:  5'- cGGCCGUGaacaaCAUGCUGCUGcGCgaccGCUGg -3'
miRNA:   3'- aCCGGCACaa---GUGCGACGAC-CG----CGAC- -5'
29460 5' -59 NC_006151.1 + 113329 0.73 0.332584
Target:  5'- gGGcCCGUG--CugGC-GCUGGCGCUGa -3'
miRNA:   3'- aCC-GGCACaaGugCGaCGACCGCGAC- -5'
29460 5' -59 NC_006151.1 + 4607 0.73 0.34778
Target:  5'- gUGGCCGUGgggCGCGUggacCcGGCGCUGg -3'
miRNA:   3'- -ACCGGCACaa-GUGCGac--GaCCGCGAC- -5'
29460 5' -59 NC_006151.1 + 70902 0.73 0.363466
Target:  5'- cUGcGUCGUGcgcugccuggCGCGCgUGCUGGCGCUGc -3'
miRNA:   3'- -AC-CGGCACaa--------GUGCG-ACGACCGCGAC- -5'
29460 5' -59 NC_006151.1 + 121183 0.73 0.371491
Target:  5'- cGGCCGUGcugCACGC-GCUcggGGCGCg- -3'
miRNA:   3'- aCCGGCACaa-GUGCGaCGA---CCGCGac -5'
29460 5' -59 NC_006151.1 + 98434 0.72 0.387899
Target:  5'- cGGCCGUGcUCGCcgagaaccugGCcgGcCUGGCGCUGu -3'
miRNA:   3'- aCCGGCACaAGUG----------CGa-C-GACCGCGAC- -5'
29460 5' -59 NC_006151.1 + 81225 0.72 0.404776
Target:  5'- cGGCgCGUGaaCACGaaGCUGGCGCc- -3'
miRNA:   3'- aCCG-GCACaaGUGCgaCGACCGCGac -5'
29460 5' -59 NC_006151.1 + 102964 0.72 0.418607
Target:  5'- -cGCCGcccacgacggCGCGCUGCUGGCGCa- -3'
miRNA:   3'- acCGGCacaa------GUGCGACGACCGCGac -5'
29460 5' -59 NC_006151.1 + 104003 0.72 0.422109
Target:  5'- cGGCCGUGgaggCGCGCcGCgcGGCGgaGg -3'
miRNA:   3'- aCCGGCACaa--GUGCGaCGa-CCGCgaC- -5'
29460 5' -59 NC_006151.1 + 99597 0.71 0.448925
Target:  5'- cGGCCGagcgcCGCGCcggGCUGGCGCa- -3'
miRNA:   3'- aCCGGCacaa-GUGCGa--CGACCGCGac -5'
29460 5' -59 NC_006151.1 + 71806 0.71 0.458071
Target:  5'- cUGGCCGaGcUCGCGCg--UGGCGCUGc -3'
miRNA:   3'- -ACCGGCaCaAGUGCGacgACCGCGAC- -5'
29460 5' -59 NC_006151.1 + 56188 0.71 0.476656
Target:  5'- cUGGCCGUGc---CGCcGgUGGCGCUGc -3'
miRNA:   3'- -ACCGGCACaaguGCGaCgACCGCGAC- -5'
29460 5' -59 NC_006151.1 + 127310 0.71 0.476656
Target:  5'- aGGCCGUcGUcCGCGCggguccgcggGCgggGGUGCUGg -3'
miRNA:   3'- aCCGGCA-CAaGUGCGa---------CGa--CCGCGAC- -5'
29460 5' -59 NC_006151.1 + 33001 0.7 0.486088
Target:  5'- uUGGCUGUGgguugUCG-GCUGUUGGcCGUUGg -3'
miRNA:   3'- -ACCGGCACa----AGUgCGACGACC-GCGAC- -5'
29460 5' -59 NC_006151.1 + 103388 0.7 0.495607
Target:  5'- cGGCUGcg--CGCGCUGCUGGgcgacuuugccaCGCUGg -3'
miRNA:   3'- aCCGGCacaaGUGCGACGACC------------GCGAC- -5'
29460 5' -59 NC_006151.1 + 107089 0.7 0.50521
Target:  5'- cUGGCgGUG-UCGCGCgUGCUcugGGCGCc- -3'
miRNA:   3'- -ACCGgCACaAGUGCG-ACGA---CCGCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.