miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29460 5' -59 NC_006151.1 + 129547 0.7 0.50521
Target:  5'- gGGCCGccgUCAacCGCaGCUGGCGCa- -3'
miRNA:   3'- aCCGGCacaAGU--GCGaCGACCGCGac -5'
29460 5' -59 NC_006151.1 + 102357 0.7 0.50521
Target:  5'- gUGGCCGgcgacgacgcGUcCGCGCccguggccaaGCUGGCGCUGg -3'
miRNA:   3'- -ACCGGCa---------CAaGUGCGa---------CGACCGCGAC- -5'
29460 5' -59 NC_006151.1 + 103832 0.7 0.514892
Target:  5'- cGGCCGUGgagaugcUCGgGCgGCUGcGCGCg- -3'
miRNA:   3'- aCCGGCACa------AGUgCGaCGAC-CGCGac -5'
29460 5' -59 NC_006151.1 + 102751 0.7 0.514892
Target:  5'- cGGCCaagcugcCGCGCaaGCUGGCGCUGa -3'
miRNA:   3'- aCCGGcacaa--GUGCGa-CGACCGCGAC- -5'
29460 5' -59 NC_006151.1 + 49166 0.7 0.514892
Target:  5'- aGGCC-UGggCGCGCcGCggGGUGCUGc -3'
miRNA:   3'- aCCGGcACaaGUGCGaCGa-CCGCGAC- -5'
29460 5' -59 NC_006151.1 + 90818 0.7 0.514892
Target:  5'- cGGCCGcagGUggUCACGCUGaacaggGGCGCc- -3'
miRNA:   3'- aCCGGCa--CA--AGUGCGACga----CCGCGac -5'
29460 5' -59 NC_006151.1 + 61770 0.7 0.514892
Target:  5'- gGGCCGUGg---UGCUGC-GGCGCg- -3'
miRNA:   3'- aCCGGCACaaguGCGACGaCCGCGac -5'
29460 5' -59 NC_006151.1 + 48842 0.7 0.514892
Target:  5'- gUGGCCcccucGUGgcgCGCGCUGCUGGaGCc- -3'
miRNA:   3'- -ACCGG-----CACaa-GUGCGACGACCgCGac -5'
29460 5' -59 NC_006151.1 + 71368 0.7 0.524649
Target:  5'- aUGGCCGUGcaccugagCACGCUGCccgacGG-GCUGu -3'
miRNA:   3'- -ACCGGCACaa------GUGCGACGa----CCgCGAC- -5'
29460 5' -59 NC_006151.1 + 51740 0.7 0.524649
Target:  5'- aUGGCCacguagacgcUGUUCAUGCgcagGUUGGCGCg- -3'
miRNA:   3'- -ACCGGc---------ACAAGUGCGa---CGACCGCGac -5'
29460 5' -59 NC_006151.1 + 113514 0.7 0.524649
Target:  5'- gGGCuuCGUGgcggacgCGCGCUucCUGGCGCUGa -3'
miRNA:   3'- aCCG--GCACaa-----GUGCGAc-GACCGCGAC- -5'
29460 5' -59 NC_006151.1 + 106514 0.7 0.528571
Target:  5'- cGcGCCGUGccgggCGCGCuggccaccuucaccgUGCUGGCGCg- -3'
miRNA:   3'- aC-CGGCACaa---GUGCG---------------ACGACCGCGac -5'
29460 5' -59 NC_006151.1 + 118756 0.7 0.538423
Target:  5'- cGGCCGUGccaCGCGCgUGCggaaccuggacgcggUGGCGCg- -3'
miRNA:   3'- aCCGGCACaa-GUGCG-ACG---------------ACCGCGac -5'
29460 5' -59 NC_006151.1 + 122290 0.69 0.554314
Target:  5'- cGGCugCGUGUgcgaccaccUCACGCggcaGCUGGCGgUGc -3'
miRNA:   3'- aCCG--GCACA---------AGUGCGa---CGACCGCgAC- -5'
29460 5' -59 NC_006151.1 + 62114 0.69 0.554314
Target:  5'- cGGCCGUGgUCGgGCugaUGCUcGGCGUg- -3'
miRNA:   3'- aCCGGCACaAGUgCG---ACGA-CCGCGac -5'
29460 5' -59 NC_006151.1 + 129217 0.69 0.564316
Target:  5'- gGGCCGccagCAgGCaGCUGGCGCg- -3'
miRNA:   3'- aCCGGCacaaGUgCGaCGACCGCGac -5'
29460 5' -59 NC_006151.1 + 126136 0.69 0.564316
Target:  5'- gGGCgcuCGccaUCGgGCUGCUGGUGCUGg -3'
miRNA:   3'- aCCG---GCacaAGUgCGACGACCGCGAC- -5'
29460 5' -59 NC_006151.1 + 85762 0.69 0.574365
Target:  5'- gGGCUGg---C-CGC-GCUGGCGCUGg -3'
miRNA:   3'- aCCGGCacaaGuGCGaCGACCGCGAC- -5'
29460 5' -59 NC_006151.1 + 71069 0.68 0.593564
Target:  5'- cGGCCGUGgUCuucuaccaccacgGCGCcGCgGGCGCg- -3'
miRNA:   3'- aCCGGCACaAG-------------UGCGaCGaCCGCGac -5'
29460 5' -59 NC_006151.1 + 92428 0.68 0.594578
Target:  5'- cGcCCGUGUUCcCGCUGgUGcuGCGCUGc -3'
miRNA:   3'- aCcGGCACAAGuGCGACgAC--CGCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.