miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29460 5' -59 NC_006151.1 + 85338 0.67 0.686022
Target:  5'- gGGCCacagcGUGcUCGcCGC-GCUGGCGCg- -3'
miRNA:   3'- aCCGG-----CACaAGU-GCGaCGACCGCGac -5'
29460 5' -59 NC_006151.1 + 130284 0.67 0.686022
Target:  5'- aGGCCGcGggCGCGCgccgGCcgacGGCGCg- -3'
miRNA:   3'- aCCGGCaCaaGUGCGa---CGa---CCGCGac -5'
29460 5' -59 NC_006151.1 + 78236 0.67 0.675926
Target:  5'- gGGCgCGcagcgGUUCGCGCUGUaccaguucauccUGGCccGCUGg -3'
miRNA:   3'- aCCG-GCa----CAAGUGCGACG------------ACCG--CGAC- -5'
29460 5' -59 NC_006151.1 + 138135 0.67 0.675926
Target:  5'- cUGGCCGUGgaCGCGgaGgaccGGCGCg- -3'
miRNA:   3'- -ACCGGCACaaGUGCgaCga--CCGCGac -5'
29460 5' -59 NC_006151.1 + 120891 0.67 0.675926
Target:  5'- aUGGCCucGcgCcCGCUGgUGGUGCUGg -3'
miRNA:   3'- -ACCGGcaCaaGuGCGACgACCGCGAC- -5'
29460 5' -59 NC_006151.1 + 61728 0.67 0.665795
Target:  5'- cGGCCac---CGUGCUGCUGGCGCa- -3'
miRNA:   3'- aCCGGcacaaGUGCGACGACCGCGac -5'
29460 5' -59 NC_006151.1 + 73414 0.67 0.665795
Target:  5'- cGGCCGUGaagccCACGCccagguccacGUUGGCGCg- -3'
miRNA:   3'- aCCGGCACaa---GUGCGa---------CGACCGCGac -5'
29460 5' -59 NC_006151.1 + 100228 0.67 0.665795
Target:  5'- gGcGCCGUGgccgaGCGCgUGgUGGCGCUc -3'
miRNA:   3'- aC-CGGCACaag--UGCG-ACgACCGCGAc -5'
29460 5' -59 NC_006151.1 + 123857 0.67 0.665795
Target:  5'- gGcGCCGUcg-CGCuagcgcugcuGCUGCUGGCGCUc -3'
miRNA:   3'- aC-CGGCAcaaGUG----------CGACGACCGCGAc -5'
29460 5' -59 NC_006151.1 + 98958 0.67 0.665795
Target:  5'- gGGCCGUGg--ACGagGC-GGCGCUGg -3'
miRNA:   3'- aCCGGCACaagUGCgaCGaCCGCGAC- -5'
29460 5' -59 NC_006151.1 + 64947 0.68 0.645461
Target:  5'- aGcGCC-UGgcCGCGCUGCgGGCGCa- -3'
miRNA:   3'- aC-CGGcACaaGUGCGACGaCCGCGac -5'
29460 5' -59 NC_006151.1 + 100600 0.68 0.635274
Target:  5'- cGGcCCGUGga-GCGCUucCUGGCGCg- -3'
miRNA:   3'- aCC-GGCACaagUGCGAc-GACCGCGac -5'
29460 5' -59 NC_006151.1 + 103882 0.68 0.635274
Target:  5'- cUGGUCGagg-CGCGCcacCUGGCGCUGg -3'
miRNA:   3'- -ACCGGCacaaGUGCGac-GACCGCGAC- -5'
29460 5' -59 NC_006151.1 + 133342 0.68 0.635274
Target:  5'- cGGCCG-GUUC-CGCgGC-GGCGgUGg -3'
miRNA:   3'- aCCGGCaCAAGuGCGaCGaCCGCgAC- -5'
29460 5' -59 NC_006151.1 + 86578 0.68 0.625085
Target:  5'- cGGCgCGgGcgCGCuccgaGCUGCUGGCGCg- -3'
miRNA:   3'- aCCG-GCaCaaGUG-----CGACGACCGCGac -5'
29460 5' -59 NC_006151.1 + 99114 0.68 0.614901
Target:  5'- aGGgCGUGcUgGCGCUGCUggaccccggGGCGCa- -3'
miRNA:   3'- aCCgGCACaAgUGCGACGA---------CCGCGac -5'
29460 5' -59 NC_006151.1 + 77507 0.68 0.614901
Target:  5'- ---aCGUGcgCACGgaGCUGGCGCg- -3'
miRNA:   3'- accgGCACaaGUGCgaCGACCGCGac -5'
29460 5' -59 NC_006151.1 + 130110 0.68 0.60473
Target:  5'- cGGCCGUgaagcccggGUUCugGCcGUgGGCGCg- -3'
miRNA:   3'- aCCGGCA---------CAAGugCGaCGaCCGCGac -5'
29460 5' -59 NC_006151.1 + 133642 0.68 0.60473
Target:  5'- gGGCgGUGgUCcgggugcgagagGCGCUGCcGGCGCg- -3'
miRNA:   3'- aCCGgCACaAG------------UGCGACGaCCGCGac -5'
29460 5' -59 NC_006151.1 + 92428 0.68 0.594578
Target:  5'- cGcCCGUGUUCcCGCUGgUGcuGCGCUGc -3'
miRNA:   3'- aCcGGCACAAGuGCGACgAC--CGCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.