Results 21 - 40 of 79 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29460 | 5' | -59 | NC_006151.1 | + | 71806 | 0.71 | 0.458071 |
Target: 5'- cUGGCCGaGcUCGCGCg--UGGCGCUGc -3' miRNA: 3'- -ACCGGCaCaAGUGCGacgACCGCGAC- -5' |
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29460 | 5' | -59 | NC_006151.1 | + | 73414 | 0.67 | 0.665795 |
Target: 5'- cGGCCGUGaagccCACGCccagguccacGUUGGCGCg- -3' miRNA: 3'- aCCGGCACaa---GUGCGa---------CGACCGCGac -5' |
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29460 | 5' | -59 | NC_006151.1 | + | 77507 | 0.68 | 0.614901 |
Target: 5'- ---aCGUGcgCACGgaGCUGGCGCg- -3' miRNA: 3'- accgGCACaaGUGCgaCGACCGCGac -5' |
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29460 | 5' | -59 | NC_006151.1 | + | 78236 | 0.67 | 0.675926 |
Target: 5'- gGGCgCGcagcgGUUCGCGCUGUaccaguucauccUGGCccGCUGg -3' miRNA: 3'- aCCG-GCa----CAAGUGCGACG------------ACCG--CGAC- -5' |
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29460 | 5' | -59 | NC_006151.1 | + | 81225 | 0.72 | 0.404776 |
Target: 5'- cGGCgCGUGaaCACGaaGCUGGCGCc- -3' miRNA: 3'- aCCG-GCACaaGUGCgaCGACCGCGac -5' |
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29460 | 5' | -59 | NC_006151.1 | + | 83327 | 0.66 | 0.715016 |
Target: 5'- gGGCCGUGagcaggCGCGCguccacgUGCUccccGGCGCg- -3' miRNA: 3'- aCCGGCACaa----GUGCG-------ACGA----CCGCGac -5' |
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29460 | 5' | -59 | NC_006151.1 | + | 85338 | 0.67 | 0.686022 |
Target: 5'- gGGCCacagcGUGcUCGcCGC-GCUGGCGCg- -3' miRNA: 3'- aCCGG-----CACaAGU-GCGaCGACCGCGac -5' |
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29460 | 5' | -59 | NC_006151.1 | + | 85762 | 0.69 | 0.574365 |
Target: 5'- gGGCUGg---C-CGC-GCUGGCGCUGg -3' miRNA: 3'- aCCGGCacaaGuGCGaCGACCGCGAC- -5' |
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29460 | 5' | -59 | NC_006151.1 | + | 86578 | 0.68 | 0.625085 |
Target: 5'- cGGCgCGgGcgCGCuccgaGCUGCUGGCGCg- -3' miRNA: 3'- aCCG-GCaCaaGUG-----CGACGACCGCGac -5' |
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29460 | 5' | -59 | NC_006151.1 | + | 86683 | 0.74 | 0.310715 |
Target: 5'- cGGCCGUGaacaaCAUGCUGCUGcGCgaccGCUGg -3' miRNA: 3'- aCCGGCACaa---GUGCGACGAC-CG----CGAC- -5' |
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29460 | 5' | -59 | NC_006151.1 | + | 87309 | 0.66 | 0.754951 |
Target: 5'- cGcCCGUGgcgCACGCcgUGCcGGCGCUc -3' miRNA: 3'- aCcGGCACaa-GUGCG--ACGaCCGCGAc -5' |
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29460 | 5' | -59 | NC_006151.1 | + | 90818 | 0.7 | 0.514892 |
Target: 5'- cGGCCGcagGUggUCACGCUGaacaggGGCGCc- -3' miRNA: 3'- aCCGGCa--CA--AGUGCGACga----CCGCGac -5' |
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29460 | 5' | -59 | NC_006151.1 | + | 92428 | 0.68 | 0.594578 |
Target: 5'- cGcCCGUGUUCcCGCUGgUGcuGCGCUGc -3' miRNA: 3'- aCcGGCACAAGuGCGACgAC--CGCGAC- -5' |
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29460 | 5' | -59 | NC_006151.1 | + | 98434 | 0.72 | 0.387899 |
Target: 5'- cGGCCGUGcUCGCcgagaaccugGCcgGcCUGGCGCUGu -3' miRNA: 3'- aCCGGCACaAGUG----------CGa-C-GACCGCGAC- -5' |
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29460 | 5' | -59 | NC_006151.1 | + | 98958 | 0.67 | 0.665795 |
Target: 5'- gGGCCGUGg--ACGagGC-GGCGCUGg -3' miRNA: 3'- aCCGGCACaagUGCgaCGaCCGCGAC- -5' |
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29460 | 5' | -59 | NC_006151.1 | + | 99114 | 0.68 | 0.614901 |
Target: 5'- aGGgCGUGcUgGCGCUGCUggaccccggGGCGCa- -3' miRNA: 3'- aCCgGCACaAgUGCGACGA---------CCGCGac -5' |
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29460 | 5' | -59 | NC_006151.1 | + | 99597 | 0.71 | 0.448925 |
Target: 5'- cGGCCGagcgcCGCGCcggGCUGGCGCa- -3' miRNA: 3'- aCCGGCacaa-GUGCGa--CGACCGCGac -5' |
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29460 | 5' | -59 | NC_006151.1 | + | 100228 | 0.67 | 0.665795 |
Target: 5'- gGcGCCGUGgccgaGCGCgUGgUGGCGCUc -3' miRNA: 3'- aC-CGGCACaag--UGCG-ACgACCGCGAc -5' |
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29460 | 5' | -59 | NC_006151.1 | + | 100600 | 0.68 | 0.635274 |
Target: 5'- cGGcCCGUGga-GCGCUucCUGGCGCg- -3' miRNA: 3'- aCC-GGCACaagUGCGAc-GACCGCGac -5' |
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29460 | 5' | -59 | NC_006151.1 | + | 102357 | 0.7 | 0.50521 |
Target: 5'- gUGGCCGgcgacgacgcGUcCGCGCccguggccaaGCUGGCGCUGg -3' miRNA: 3'- -ACCGGCa---------CAaGUGCGa---------CGACCGCGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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