miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29460 5' -59 NC_006151.1 + 4607 0.73 0.34778
Target:  5'- gUGGCCGUGgggCGCGUggacCcGGCGCUGg -3'
miRNA:   3'- -ACCGGCACaa-GUGCGac--GaCCGCGAC- -5'
29460 5' -59 NC_006151.1 + 5690 0.67 0.706071
Target:  5'- -cGCCGUGccggCGCugcggccaccGCUGCUGGCuguGCUGg -3'
miRNA:   3'- acCGGCACaa--GUG----------CGACGACCG---CGAC- -5'
29460 5' -59 NC_006151.1 + 22337 0.66 0.735658
Target:  5'- aGcGCCGccaauaGCGCUGCgagcagcaUGGCGCUGg -3'
miRNA:   3'- aC-CGGCacaag-UGCGACG--------ACCGCGAC- -5'
29460 5' -59 NC_006151.1 + 33001 0.7 0.486088
Target:  5'- uUGGCUGUGgguugUCG-GCUGUUGGcCGUUGg -3'
miRNA:   3'- -ACCGGCACa----AGUgCGACGACC-GCGAC- -5'
29460 5' -59 NC_006151.1 + 39891 0.67 0.706071
Target:  5'- cGGCCGaGUUgCGCGCcuucUGCgccgcgGGCuGCUGg -3'
miRNA:   3'- aCCGGCaCAA-GUGCG----ACGa-----CCG-CGAC- -5'
29460 5' -59 NC_006151.1 + 48842 0.7 0.514892
Target:  5'- gUGGCCcccucGUGgcgCGCGCUGCUGGaGCc- -3'
miRNA:   3'- -ACCGG-----CACaa-GUGCGACGACCgCGac -5'
29460 5' -59 NC_006151.1 + 49166 0.7 0.514892
Target:  5'- aGGCC-UGggCGCGCcGCggGGUGCUGc -3'
miRNA:   3'- aCCGGcACaaGUGCGaCGa-CCGCGAC- -5'
29460 5' -59 NC_006151.1 + 51740 0.7 0.524649
Target:  5'- aUGGCCacguagacgcUGUUCAUGCgcagGUUGGCGCg- -3'
miRNA:   3'- -ACCGGc---------ACAAGUGCGa---CGACCGCGac -5'
29460 5' -59 NC_006151.1 + 56188 0.71 0.476656
Target:  5'- cUGGCCGUGc---CGCcGgUGGCGCUGc -3'
miRNA:   3'- -ACCGGCACaaguGCGaCgACCGCGAC- -5'
29460 5' -59 NC_006151.1 + 56654 0.66 0.753996
Target:  5'- aGGCCGUGUaC-CGCUGgUggacgacGGCGCc- -3'
miRNA:   3'- aCCGGCACAaGuGCGACgA-------CCGCGac -5'
29460 5' -59 NC_006151.1 + 61728 0.67 0.665795
Target:  5'- cGGCCac---CGUGCUGCUGGCGCa- -3'
miRNA:   3'- aCCGGcacaaGUGCGACGACCGCGac -5'
29460 5' -59 NC_006151.1 + 61770 0.7 0.514892
Target:  5'- gGGCCGUGg---UGCUGC-GGCGCg- -3'
miRNA:   3'- aCCGGCACaaguGCGACGaCCGCGac -5'
29460 5' -59 NC_006151.1 + 62114 0.69 0.554314
Target:  5'- cGGCCGUGgUCGgGCugaUGCUcGGCGUg- -3'
miRNA:   3'- aCCGGCACaAGUgCG---ACGA-CCGCGac -5'
29460 5' -59 NC_006151.1 + 62194 1.08 0.001307
Target:  5'- cUGGCCGUGUUCACGCUGCUGGCGCUGg -3'
miRNA:   3'- -ACCGGCACAAGUGCGACGACCGCGAC- -5'
29460 5' -59 NC_006151.1 + 64947 0.68 0.645461
Target:  5'- aGcGCC-UGgcCGCGCUGCgGGCGCa- -3'
miRNA:   3'- aC-CGGcACaaGUGCGACGaCCGCGac -5'
29460 5' -59 NC_006151.1 + 65440 0.66 0.735658
Target:  5'- aGGCCGgGaaCAUGa-GCUGGCGCa- -3'
miRNA:   3'- aCCGGCaCaaGUGCgaCGACCGCGac -5'
29460 5' -59 NC_006151.1 + 68767 0.66 0.725873
Target:  5'- cGGCgGUGgcgCGCGCgGCgaGGUGCg- -3'
miRNA:   3'- aCCGgCACaa-GUGCGaCGa-CCGCGac -5'
29460 5' -59 NC_006151.1 + 70902 0.73 0.363466
Target:  5'- cUGcGUCGUGcgcugccuggCGCGCgUGCUGGCGCUGc -3'
miRNA:   3'- -AC-CGGCACaa--------GUGCG-ACGACCGCGAC- -5'
29460 5' -59 NC_006151.1 + 71069 0.68 0.593564
Target:  5'- cGGCCGUGgUCuucuaccaccacgGCGCcGCgGGCGCg- -3'
miRNA:   3'- aCCGGCACaAG-------------UGCGaCGaCCGCGac -5'
29460 5' -59 NC_006151.1 + 71368 0.7 0.524649
Target:  5'- aUGGCCGUGcaccugagCACGCUGCccgacGG-GCUGu -3'
miRNA:   3'- -ACCGGCACaa------GUGCGACGa----CCgCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.