miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29460 5' -59 NC_006151.1 + 138135 0.67 0.675926
Target:  5'- cUGGCCGUGgaCGCGgaGgaccGGCGCg- -3'
miRNA:   3'- -ACCGGCACaaGUGCgaCga--CCGCGac -5'
29460 5' -59 NC_006151.1 + 137055 0.66 0.764441
Target:  5'- gGcGCCgGUGUacCGCGUggaGCUGGCGCa- -3'
miRNA:   3'- aC-CGG-CACAa-GUGCGa--CGACCGCGac -5'
29460 5' -59 NC_006151.1 + 136992 0.66 0.725873
Target:  5'- gGGCgGcGggCGCGC-GCgcacGGCGCUGg -3'
miRNA:   3'- aCCGgCaCaaGUGCGaCGa---CCGCGAC- -5'
29460 5' -59 NC_006151.1 + 133642 0.68 0.60473
Target:  5'- gGGCgGUGgUCcgggugcgagagGCGCUGCcGGCGCg- -3'
miRNA:   3'- aCCGgCACaAG------------UGCGACGaCCGCGac -5'
29460 5' -59 NC_006151.1 + 133342 0.68 0.635274
Target:  5'- cGGCCG-GUUC-CGCgGC-GGCGgUGg -3'
miRNA:   3'- aCCGGCaCAAGuGCGaCGaCCGCgAC- -5'
29460 5' -59 NC_006151.1 + 131060 0.66 0.754951
Target:  5'- aGGCCGUcucCAUGCcGCggagGGCGCg- -3'
miRNA:   3'- aCCGGCAcaaGUGCGaCGa---CCGCGac -5'
29460 5' -59 NC_006151.1 + 130284 0.67 0.686022
Target:  5'- aGGCCGcGggCGCGCgccgGCcgacGGCGCg- -3'
miRNA:   3'- aCCGGCaCaaGUGCGa---CGa---CCGCGac -5'
29460 5' -59 NC_006151.1 + 130110 0.68 0.60473
Target:  5'- cGGCCGUgaagcccggGUUCugGCcGUgGGCGCg- -3'
miRNA:   3'- aCCGGCA---------CAAGugCGaCGaCCGCGac -5'
29460 5' -59 NC_006151.1 + 129547 0.7 0.50521
Target:  5'- gGGCCGccgUCAacCGCaGCUGGCGCa- -3'
miRNA:   3'- aCCGGCacaAGU--GCGaCGACCGCGac -5'
29460 5' -59 NC_006151.1 + 129217 0.69 0.564316
Target:  5'- gGGCCGccagCAgGCaGCUGGCGCg- -3'
miRNA:   3'- aCCGGCacaaGUgCGaCGACCGCGac -5'
29460 5' -59 NC_006151.1 + 127310 0.71 0.476656
Target:  5'- aGGCCGUcGUcCGCGCggguccgcggGCgggGGUGCUGg -3'
miRNA:   3'- aCCGGCA-CAaGUGCGa---------CGa--CCGCGAC- -5'
29460 5' -59 NC_006151.1 + 126136 0.69 0.564316
Target:  5'- gGGCgcuCGccaUCGgGCUGCUGGUGCUGg -3'
miRNA:   3'- aCCG---GCacaAGUgCGACGACCGCGAC- -5'
29460 5' -59 NC_006151.1 + 123857 0.67 0.665795
Target:  5'- gGcGCCGUcg-CGCuagcgcugcuGCUGCUGGCGCUc -3'
miRNA:   3'- aC-CGGCAcaaGUG----------CGACGACCGCGAc -5'
29460 5' -59 NC_006151.1 + 122290 0.69 0.554314
Target:  5'- cGGCugCGUGUgcgaccaccUCACGCggcaGCUGGCGgUGc -3'
miRNA:   3'- aCCG--GCACA---------AGUGCGa---CGACCGCgAC- -5'
29460 5' -59 NC_006151.1 + 121917 0.67 0.706071
Target:  5'- gGGCCGagggGgaccgCGUGCUGggGGCGCUGg -3'
miRNA:   3'- aCCGGCa---Caa---GUGCGACgaCCGCGAC- -5'
29460 5' -59 NC_006151.1 + 121875 0.66 0.735658
Target:  5'- -cGCCGcucacGUgCGCGCUGCgccUGGCGCUc -3'
miRNA:   3'- acCGGCa----CAaGUGCGACG---ACCGCGAc -5'
29460 5' -59 NC_006151.1 + 121183 0.73 0.371491
Target:  5'- cGGCCGUGcugCACGC-GCUcggGGCGCg- -3'
miRNA:   3'- aCCGGCACaa-GUGCGaCGA---CCGCGac -5'
29460 5' -59 NC_006151.1 + 121143 0.66 0.764441
Target:  5'- cUGGCCGacggCGgGCcGCUGGUGCa- -3'
miRNA:   3'- -ACCGGCacaaGUgCGaCGACCGCGac -5'
29460 5' -59 NC_006151.1 + 120891 0.67 0.675926
Target:  5'- aUGGCCucGcgCcCGCUGgUGGUGCUGg -3'
miRNA:   3'- -ACCGGcaCaaGuGCGACgACCGCGAC- -5'
29460 5' -59 NC_006151.1 + 119992 0.77 0.212494
Target:  5'- cUGGCgCG-GcgCACGCUGCUGGCGgUGc -3'
miRNA:   3'- -ACCG-GCaCaaGUGCGACGACCGCgAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.