miRNA display CGI


Results 21 - 40 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29472 5' -59.9 NC_006151.1 + 77183 0.7 0.520773
Target:  5'- cCGCGuccacGUCCgccgccgCGUCCuccauCCCCGCGCCGc -3'
miRNA:   3'- -GCGCc----UAGGa------GUAGGu----GGGGUGCGGC- -5'
29472 5' -59.9 NC_006151.1 + 97913 0.7 0.520773
Target:  5'- gCGCGGAUgCCgUCG-CCGCCgaggCCGCGCCc -3'
miRNA:   3'- -GCGCCUA-GG-AGUaGGUGG----GGUGCGGc -5'
29472 5' -59.9 NC_006151.1 + 89522 0.7 0.520773
Target:  5'- aGCGGA-CgUgGUCCGCCUCgagcaGCGCCGa -3'
miRNA:   3'- gCGCCUaGgAgUAGGUGGGG-----UGCGGC- -5'
29472 5' -59.9 NC_006151.1 + 106571 0.7 0.53031
Target:  5'- cCGCGGcUgCUCucggcgcugugGUCCGCCCUGCaGCCGg -3'
miRNA:   3'- -GCGCCuAgGAG-----------UAGGUGGGGUG-CGGC- -5'
29472 5' -59.9 NC_006151.1 + 69065 0.7 0.53031
Target:  5'- gGCGGcUCCUCGUCC-CCCagcggCACgGCCa -3'
miRNA:   3'- gCGCCuAGGAGUAGGuGGG-----GUG-CGGc -5'
29472 5' -59.9 NC_006151.1 + 36732 0.7 0.539909
Target:  5'- gGCGGcucgAUCCUCggCCGCUUgGCGCCc -3'
miRNA:   3'- gCGCC----UAGGAGuaGGUGGGgUGCGGc -5'
29472 5' -59.9 NC_006151.1 + 66508 0.7 0.539909
Target:  5'- gCGCGGAUCUUCG-CCggGCUCgcgCGCGCCGc -3'
miRNA:   3'- -GCGCCUAGGAGUaGG--UGGG---GUGCGGC- -5'
29472 5' -59.9 NC_006151.1 + 93239 0.7 0.539909
Target:  5'- gCGcCGGccgccaccAUCCUUccccaguccaaGUCCACCCC-CGCCGg -3'
miRNA:   3'- -GC-GCC--------UAGGAG-----------UAGGUGGGGuGCGGC- -5'
29472 5' -59.9 NC_006151.1 + 108902 0.69 0.549567
Target:  5'- cCGCGaaggCCcgUAUCgGCCCCGCGCCa -3'
miRNA:   3'- -GCGCcua-GGa-GUAGgUGGGGUGCGGc -5'
29472 5' -59.9 NC_006151.1 + 101776 0.69 0.549567
Target:  5'- aCGCGGggCCcCGgggCCAUCCCGuccuCGCCGu -3'
miRNA:   3'- -GCGCCuaGGaGUa--GGUGGGGU----GCGGC- -5'
29472 5' -59.9 NC_006151.1 + 8333 0.69 0.559277
Target:  5'- gCGCGGG-CCUCGaUCGCgCC-CGCCGg -3'
miRNA:   3'- -GCGCCUaGGAGUaGGUGgGGuGCGGC- -5'
29472 5' -59.9 NC_006151.1 + 127478 0.69 0.559277
Target:  5'- gCGCGGAacgagCCgCGg--ACCCCGCGCCGg -3'
miRNA:   3'- -GCGCCUa----GGaGUaggUGGGGUGCGGC- -5'
29472 5' -59.9 NC_006151.1 + 58057 0.69 0.569036
Target:  5'- gCGCGcaguaguaGUCCUCGUCCGCgCCCuCGCgGg -3'
miRNA:   3'- -GCGCc-------UAGGAGUAGGUG-GGGuGCGgC- -5'
29472 5' -59.9 NC_006151.1 + 141568 0.69 0.585716
Target:  5'- gGCGcGAUCCUCcgCCGCUCCuccccccgggcgagaGCCGc -3'
miRNA:   3'- gCGC-CUAGGAGuaGGUGGGGug-------------CGGC- -5'
29472 5' -59.9 NC_006151.1 + 38829 0.69 0.58867
Target:  5'- gGCGGcuUCCgccgCGUCCcggccggcgagACCCaCACGCCGc -3'
miRNA:   3'- gCGCCu-AGGa---GUAGG-----------UGGG-GUGCGGC- -5'
29472 5' -59.9 NC_006151.1 + 9396 0.69 0.597548
Target:  5'- gCGCGGGUCgggccuuCUUccCCAUCCC-CGCCGg -3'
miRNA:   3'- -GCGCCUAG-------GAGuaGGUGGGGuGCGGC- -5'
29472 5' -59.9 NC_006151.1 + 133170 0.69 0.598535
Target:  5'- gCGUGGG-CCUCggCCACgcguCCCACgGCCGc -3'
miRNA:   3'- -GCGCCUaGGAGuaGGUG----GGGUG-CGGC- -5'
29472 5' -59.9 NC_006151.1 + 50397 0.69 0.598535
Target:  5'- cCGCGG-UCCUCGcgCgGCCCCcccgacgaggagGCGCCc -3'
miRNA:   3'- -GCGCCuAGGAGUa-GgUGGGG------------UGCGGc -5'
29472 5' -59.9 NC_006151.1 + 99732 0.69 0.598535
Target:  5'- gCGCGGcg-CUCGUCgACCUCGcCGCCGc -3'
miRNA:   3'- -GCGCCuagGAGUAGgUGGGGU-GCGGC- -5'
29472 5' -59.9 NC_006151.1 + 61439 0.69 0.598535
Target:  5'- cCGCGGcgCCcgcccgCGUCCGCCgCCAUGUgCGg -3'
miRNA:   3'- -GCGCCuaGGa-----GUAGGUGG-GGUGCG-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.