miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29472 5' -59.9 NC_006151.1 + 142159 0.67 0.677712
Target:  5'- gCGCaGGGggCUCGUCCACCuCCAUGggcuCCGa -3'
miRNA:   3'- -GCG-CCUagGAGUAGGUGG-GGUGC----GGC- -5'
29472 5' -59.9 NC_006151.1 + 141568 0.69 0.585716
Target:  5'- gGCGcGAUCCUCcgCCGCUCCuccccccgggcgagaGCCGc -3'
miRNA:   3'- gCGC-CUAGGAGuaGGUGGGGug-------------CGGC- -5'
29472 5' -59.9 NC_006151.1 + 139608 0.66 0.735817
Target:  5'- gGCGGcccGUCCgggcgCGgcugggggCCAUCCgGCGCCGg -3'
miRNA:   3'- gCGCC---UAGGa----GUa-------GGUGGGgUGCGGC- -5'
29472 5' -59.9 NC_006151.1 + 138500 0.66 0.76292
Target:  5'- gGCGGGcgcccgcugcaccUCCUCGUCCucggggugauggGCgCgUACGCCGg -3'
miRNA:   3'- gCGCCU-------------AGGAGUAGG------------UG-GgGUGCGGC- -5'
29472 5' -59.9 NC_006151.1 + 138075 0.67 0.687531
Target:  5'- gCGCGGAaccgcgaggCCUUcUUCGCCCggcgCACGCCGc -3'
miRNA:   3'- -GCGCCUa--------GGAGuAGGUGGG----GUGCGGC- -5'
29472 5' -59.9 NC_006151.1 + 135052 0.72 0.404355
Target:  5'- gGCGGucccccUCCUCGUCUuCCCC-CGCCu -3'
miRNA:   3'- gCGCCu-----AGGAGUAGGuGGGGuGCGGc -5'
29472 5' -59.9 NC_006151.1 + 134525 0.79 0.146335
Target:  5'- cCGCGGcAUCgUCGUCUuCCCCACGCCc -3'
miRNA:   3'- -GCGCC-UAGgAGUAGGuGGGGUGCGGc -5'
29472 5' -59.9 NC_006151.1 + 133170 0.69 0.598535
Target:  5'- gCGUGGG-CCUCggCCACgcguCCCACgGCCGc -3'
miRNA:   3'- -GCGCCUaGGAGuaGGUG----GGGUG-CGGC- -5'
29472 5' -59.9 NC_006151.1 + 131545 0.68 0.638161
Target:  5'- uGCGaGcgCCUCGggcgCCgcacggGCCCCGCGUCGc -3'
miRNA:   3'- gCGC-CuaGGAGUa---GG------UGGGGUGCGGC- -5'
29472 5' -59.9 NC_006151.1 + 127571 0.67 0.697307
Target:  5'- cCGcCGGcgCCUCGUUCGCCguCCcCGUCGg -3'
miRNA:   3'- -GC-GCCuaGGAGUAGGUGG--GGuGCGGC- -5'
29472 5' -59.9 NC_006151.1 + 127478 0.69 0.559277
Target:  5'- gCGCGGAacgagCCgCGg--ACCCCGCGCCGg -3'
miRNA:   3'- -GCGCCUa----GGaGUaggUGGGGUGCGGC- -5'
29472 5' -59.9 NC_006151.1 + 126175 0.66 0.735817
Target:  5'- uCGCGGccuUCCUggccuaccggcaCAUCuCGCgCCUGCGCCGc -3'
miRNA:   3'- -GCGCCu--AGGA------------GUAG-GUG-GGGUGCGGC- -5'
29472 5' -59.9 NC_006151.1 + 125692 0.67 0.697307
Target:  5'- uCGCGcGA-CCUCAUCgaGCCCUGCaCCGg -3'
miRNA:   3'- -GCGC-CUaGGAGUAGg-UGGGGUGcGGC- -5'
29472 5' -59.9 NC_006151.1 + 122619 0.66 0.745254
Target:  5'- uGCGGGcCCUCGaCCugUUCACGCa- -3'
miRNA:   3'- gCGCCUaGGAGUaGGugGGGUGCGgc -5'
29472 5' -59.9 NC_006151.1 + 112587 0.68 0.608424
Target:  5'- cCGCGGG-CUUCGUggaggCCGCCgCgGCGCCGc -3'
miRNA:   3'- -GCGCCUaGGAGUA-----GGUGG-GgUGCGGC- -5'
29472 5' -59.9 NC_006151.1 + 109365 0.68 0.638161
Target:  5'- cCGCcaccaCCUCuUCCGCCCC-CGCCGc -3'
miRNA:   3'- -GCGccua-GGAGuAGGUGGGGuGCGGC- -5'
29472 5' -59.9 NC_006151.1 + 108902 0.69 0.549567
Target:  5'- cCGCGaaggCCcgUAUCgGCCCCGCGCCa -3'
miRNA:   3'- -GCGCcua-GGa-GUAGgUGGGGUGCGGc -5'
29472 5' -59.9 NC_006151.1 + 108159 0.68 0.648074
Target:  5'- cCGCgGGGUgCUCcccCCGCCCCGC-CCGc -3'
miRNA:   3'- -GCG-CCUAgGAGua-GGUGGGGUGcGGC- -5'
29472 5' -59.9 NC_006151.1 + 107026 0.66 0.745254
Target:  5'- gCGCuGAUCg-CGgcgCgGCCCCugGCCGg -3'
miRNA:   3'- -GCGcCUAGgaGUa--GgUGGGGugCGGC- -5'
29472 5' -59.9 NC_006151.1 + 106571 0.7 0.53031
Target:  5'- cCGCGGcUgCUCucggcgcugugGUCCGCCCUGCaGCCGg -3'
miRNA:   3'- -GCGCCuAgGAG-----------UAGGUGGGGUG-CGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.