Results 1 - 20 of 103 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29474 | 3' | -63.3 | NC_006151.1 | + | 51790 | 1.08 | 0.000629 |
Target: 5'- gGCCACCCGCUCCAGGCUCAGGCCCUGc -3' miRNA: 3'- -CGGUGGGCGAGGUCCGAGUCCGGGAC- -5' |
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29474 | 3' | -63.3 | NC_006151.1 | + | 58863 | 0.66 | 0.545174 |
Target: 5'- aGCuCGCCCgGCgcgCCGGGUccgucCAGGCCgUGu -3' miRNA: 3'- -CG-GUGGG-CGa--GGUCCGa----GUCCGGgAC- -5' |
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29474 | 3' | -63.3 | NC_006151.1 | + | 86099 | 0.66 | 0.544213 |
Target: 5'- cGCCaugggGCCCGUguacgugUCC-GGCUaccuGGCCCUGu -3' miRNA: 3'- -CGG-----UGGGCG-------AGGuCCGAgu--CCGGGAC- -5' |
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29474 | 3' | -63.3 | NC_006151.1 | + | 78956 | 0.66 | 0.535594 |
Target: 5'- cCCGCCCGCcUCGGuCUCGGuGCCCc- -3' miRNA: 3'- cGGUGGGCGaGGUCcGAGUC-CGGGac -5' |
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29474 | 3' | -63.3 | NC_006151.1 | + | 18361 | 0.66 | 0.535594 |
Target: 5'- uGCUgaACUCGUccucggcgUCCAGGCUCAcguacGGCCCc- -3' miRNA: 3'- -CGG--UGGGCG--------AGGUCCGAGU-----CCGGGac -5' |
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29474 | 3' | -63.3 | NC_006151.1 | + | 114135 | 0.66 | 0.526074 |
Target: 5'- cGCCG-CCGCcgagCCGcGGCUCGGGCgCa- -3' miRNA: 3'- -CGGUgGGCGa---GGU-CCGAGUCCGgGac -5' |
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29474 | 3' | -63.3 | NC_006151.1 | + | 95337 | 0.66 | 0.526074 |
Target: 5'- cGCCGCCCGC--CAGGCacgcgggCAGGUUCa- -3' miRNA: 3'- -CGGUGGGCGagGUCCGa------GUCCGGGac -5' |
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29474 | 3' | -63.3 | NC_006151.1 | + | 128426 | 0.66 | 0.526074 |
Target: 5'- cGCaCACgCCGCUCUuccaGGGCgUCucGGCCCa- -3' miRNA: 3'- -CG-GUG-GGCGAGG----UCCG-AGu-CCGGGac -5' |
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29474 | 3' | -63.3 | NC_006151.1 | + | 82134 | 0.66 | 0.526074 |
Target: 5'- aGCgGCCCGCgggcgggCCcggcGGCUCcAGGUCCg- -3' miRNA: 3'- -CGgUGGGCGa------GGu---CCGAG-UCCGGGac -5' |
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29474 | 3' | -63.3 | NC_006151.1 | + | 48664 | 0.66 | 0.545174 |
Target: 5'- aGCC-CCCGC-CgGGGCagGGGCCg-- -3' miRNA: 3'- -CGGuGGGCGaGgUCCGagUCCGGgac -5' |
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29474 | 3' | -63.3 | NC_006151.1 | + | 54694 | 0.66 | 0.545174 |
Target: 5'- cGUCGCCgGCagcgugCUGGGC-CAGGgCCUGg -3' miRNA: 3'- -CGGUGGgCGa-----GGUCCGaGUCCgGGAC- -5' |
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29474 | 3' | -63.3 | NC_006151.1 | + | 63773 | 0.66 | 0.545174 |
Target: 5'- cGCC-CCCGCgucgCCAGGCg-GGGUCg-- -3' miRNA: 3'- -CGGuGGGCGa---GGUCCGagUCCGGgac -5' |
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29474 | 3' | -63.3 | NC_006151.1 | + | 124125 | 0.66 | 0.574219 |
Target: 5'- cGCCGuCCgGCUCCAcgguggugcGGCUggagcccgagCAGGCCUg- -3' miRNA: 3'- -CGGU-GGgCGAGGU---------CCGA----------GUCCGGGac -5' |
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29474 | 3' | -63.3 | NC_006151.1 | + | 46842 | 0.66 | 0.574219 |
Target: 5'- cGCCGCCC-C-CCGGGg-CGGGCCUc- -3' miRNA: 3'- -CGGUGGGcGaGGUCCgaGUCCGGGac -5' |
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29474 | 3' | -63.3 | NC_006151.1 | + | 9388 | 0.66 | 0.545174 |
Target: 5'- gGCCcCCCGCg-CGGG-UCGGGCCUUc -3' miRNA: 3'- -CGGuGGGCGagGUCCgAGUCCGGGAc -5' |
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29474 | 3' | -63.3 | NC_006151.1 | + | 138312 | 0.66 | 0.545174 |
Target: 5'- uCCGCgCGCUUCAGcuGCcugCGGGCCCg- -3' miRNA: 3'- cGGUGgGCGAGGUC--CGa--GUCCGGGac -5' |
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29474 | 3' | -63.3 | NC_006151.1 | + | 136980 | 0.66 | 0.545174 |
Target: 5'- gGCCG-CCGCgCCGGGCggCGGGCgCg- -3' miRNA: 3'- -CGGUgGGCGaGGUCCGa-GUCCGgGac -5' |
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29474 | 3' | -63.3 | NC_006151.1 | + | 109120 | 0.66 | 0.545174 |
Target: 5'- cGCCgGCCCGCgcccgCC-GGC-CGGGCaCCUc -3' miRNA: 3'- -CGG-UGGGCGa----GGuCCGaGUCCG-GGAc -5' |
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29474 | 3' | -63.3 | NC_006151.1 | + | 86183 | 0.66 | 0.545174 |
Target: 5'- gGCCGCCgCGCUgccCCcGGC--GGGCCCg- -3' miRNA: 3'- -CGGUGG-GCGA---GGuCCGagUCCGGGac -5' |
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29474 | 3' | -63.3 | NC_006151.1 | + | 64624 | 0.66 | 0.545174 |
Target: 5'- cGCCGCCgGCcgCgGGGCgCGGcGCCCc- -3' miRNA: 3'- -CGGUGGgCGa-GgUCCGaGUC-CGGGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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