miRNA display CGI


Results 21 - 40 of 472 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29476 3' -59.5 NC_006151.1 + 64452 0.79 0.151804
Target:  5'- uCCACCgucaggauGGCGGCGcGCGCCGCCGCgGCg -3'
miRNA:   3'- -GGUGG--------UCGUCGU-CGUGGUGGUGgCGa -5'
29476 3' -59.5 NC_006151.1 + 130488 0.79 0.151804
Target:  5'- gCCG-CAGCGcGCGGCGCCACaCGCCGCg -3'
miRNA:   3'- -GGUgGUCGU-CGUCGUGGUG-GUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 76876 0.78 0.155687
Target:  5'- gCCGCCAGgAGCcccAGCGCCGCCuGCUGCg -3'
miRNA:   3'- -GGUGGUCgUCG---UCGUGGUGG-UGGCGa -5'
29476 3' -59.5 NC_006151.1 + 52432 0.78 0.159659
Target:  5'- uCCuCgGGCAcgcGCAGCGCCGCCGCCGUg -3'
miRNA:   3'- -GGuGgUCGU---CGUCGUGGUGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 104267 0.78 0.159659
Target:  5'- aCGCCGGCgcGGCGGCGggcCCGCCGCUGCa -3'
miRNA:   3'- gGUGGUCG--UCGUCGU---GGUGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 120092 0.78 0.159659
Target:  5'- aCCAguuCCAGCcGguGCugCGCCGCCGCg -3'
miRNA:   3'- -GGU---GGUCGuCguCGugGUGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 59429 0.78 0.163723
Target:  5'- gCGCCAGCucGGCgucGGcCGCCGCCGCCGCg -3'
miRNA:   3'- gGUGGUCG--UCG---UC-GUGGUGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 109039 0.78 0.167879
Target:  5'- cCCACCGGCGGCAGCAgCAgCAgCaGCUa -3'
miRNA:   3'- -GGUGGUCGUCGUCGUgGUgGUgG-CGA- -5'
29476 3' -59.5 NC_006151.1 + 109408 0.78 0.17213
Target:  5'- aCCACCuucGCGGCcggccGCACCACCGCCGg- -3'
miRNA:   3'- -GGUGGu--CGUCGu----CGUGGUGGUGGCga -5'
29476 3' -59.5 NC_006151.1 + 109902 0.78 0.17213
Target:  5'- uCCGCCgcGGCGGCAGCAgcagagaccuCCGCCGCCGg- -3'
miRNA:   3'- -GGUGG--UCGUCGUCGU----------GGUGGUGGCga -5'
29476 3' -59.5 NC_006151.1 + 36638 0.78 0.176477
Target:  5'- cCCGgCGGCGGCGGCGCCcCCuCCGCc -3'
miRNA:   3'- -GGUgGUCGUCGUCGUGGuGGuGGCGa -5'
29476 3' -59.5 NC_006151.1 + 1681 0.77 0.180921
Target:  5'- gCCGCCGagcccuccGCcGCGGcCGCCGCCGCCGCUu -3'
miRNA:   3'- -GGUGGU--------CGuCGUC-GUGGUGGUGGCGA- -5'
29476 3' -59.5 NC_006151.1 + 100093 0.77 0.190106
Target:  5'- gCGCCGGCGcCGGCGCCGCCcUCGCUg -3'
miRNA:   3'- gGUGGUCGUcGUCGUGGUGGuGGCGA- -5'
29476 3' -59.5 NC_006151.1 + 22133 0.77 0.194851
Target:  5'- uCCACCuGCGGgucggagauCAGCGCCACCAccCCGCa -3'
miRNA:   3'- -GGUGGuCGUC---------GUCGUGGUGGU--GGCGa -5'
29476 3' -59.5 NC_006151.1 + 119040 0.77 0.194851
Target:  5'- gCGCCaaGGaCGGCGGCGCCGCgGCCGCc -3'
miRNA:   3'- gGUGG--UC-GUCGUCGUGGUGgUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 123333 0.77 0.1997
Target:  5'- -gGCCAcGguGCAGCGCCACCccguggacGCCGCg -3'
miRNA:   3'- ggUGGU-CguCGUCGUGGUGG--------UGGCGa -5'
29476 3' -59.5 NC_006151.1 + 48647 0.77 0.1997
Target:  5'- aCCGCCGcuGCAGCAGCAgCCcCCGCCGg- -3'
miRNA:   3'- -GGUGGU--CGUCGUCGU-GGuGGUGGCga -5'
29476 3' -59.5 NC_006151.1 + 61338 0.77 0.1997
Target:  5'- cCgGCCAGCGGCugcGCACCACgGCCGg- -3'
miRNA:   3'- -GgUGGUCGUCGu--CGUGGUGgUGGCga -5'
29476 3' -59.5 NC_006151.1 + 69713 0.77 0.201668
Target:  5'- gCCGCCgggGGCAGCAGCGcgucgauguggccccCCGCgGCCGCg -3'
miRNA:   3'- -GGUGG---UCGUCGUCGU---------------GGUGgUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 107539 0.76 0.209711
Target:  5'- gCC-CCGGCGGCcccgccGGCGCCGCCGcCCGCc -3'
miRNA:   3'- -GGuGGUCGUCG------UCGUGGUGGU-GGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.