miRNA display CGI


Results 1 - 20 of 472 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29476 3' -59.5 NC_006151.1 + 142911 0.73 0.327508
Target:  5'- gCCACCGGC-GCgGGCACCGaCACCGUc -3'
miRNA:   3'- -GGUGGUCGuCG-UCGUGGUgGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 141638 0.66 0.745079
Target:  5'- gCUGCC-GCGGCGGCGCggcgggGCC-CCGCg -3'
miRNA:   3'- -GGUGGuCGUCGUCGUGg-----UGGuGGCGa -5'
29476 3' -59.5 NC_006151.1 + 141227 0.68 0.595458
Target:  5'- gC-CCAGCAGCgacGGCugCACCACgGa- -3'
miRNA:   3'- gGuGGUCGUCG---UCGugGUGGUGgCga -5'
29476 3' -59.5 NC_006151.1 + 141117 0.69 0.575393
Target:  5'- cCCACCAGCAGgAGCAgCCcCCcCCa-- -3'
miRNA:   3'- -GGUGGUCGUCgUCGU-GGuGGuGGcga -5'
29476 3' -59.5 NC_006151.1 + 140493 0.67 0.656051
Target:  5'- -aACCGGCuGCGacGCGcCCACCuGCCGCc -3'
miRNA:   3'- ggUGGUCGuCGU--CGU-GGUGG-UGGCGa -5'
29476 3' -59.5 NC_006151.1 + 140206 0.66 0.715954
Target:  5'- gCCACCgcGGgGGCGGUGCUgcagaACCugCGCc -3'
miRNA:   3'- -GGUGG--UCgUCGUCGUGG-----UGGugGCGa -5'
29476 3' -59.5 NC_006151.1 + 140033 0.69 0.565417
Target:  5'- aCCGCCuguuugAGguGCGGcCGCaCGCCACCGa- -3'
miRNA:   3'- -GGUGG------UCguCGUC-GUG-GUGGUGGCga -5'
29476 3' -59.5 NC_006151.1 + 139720 0.81 0.111646
Target:  5'- -gGCCAGCAGCAGCACCAgCgGCgGCg -3'
miRNA:   3'- ggUGGUCGUCGUCGUGGU-GgUGgCGa -5'
29476 3' -59.5 NC_006151.1 + 139683 0.66 0.754607
Target:  5'- cCCugCGGCAGCGGCGgCGgCAgCaacaGCa -3'
miRNA:   3'- -GGugGUCGUCGUCGUgGUgGU-Gg---CGa -5'
29476 3' -59.5 NC_006151.1 + 139024 0.66 0.754607
Target:  5'- cCCAUCAcGCuGGCA-CACCGCCAUcccaCGCUg -3'
miRNA:   3'- -GGUGGU-CG-UCGUcGUGGUGGUG----GCGA- -5'
29476 3' -59.5 NC_006151.1 + 138831 0.69 0.555486
Target:  5'- gCGCCAGgAGCGGCGCauguuugGCCccuuCCGCg -3'
miRNA:   3'- gGUGGUCgUCGUCGUGg------UGGu---GGCGa -5'
29476 3' -59.5 NC_006151.1 + 138588 0.67 0.696173
Target:  5'- cCCACCccgucguGUAcGCGGCGCUGCCGCUcgGCg -3'
miRNA:   3'- -GGUGGu------CGU-CGUCGUGGUGGUGG--CGa -5'
29476 3' -59.5 NC_006151.1 + 138429 0.67 0.6862
Target:  5'- uUCGCUacaaagugcGGCAGCAacgcgacgcGCACCAuuuUCACCGCg -3'
miRNA:   3'- -GGUGG---------UCGUCGU---------CGUGGU---GGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 138337 0.67 0.676183
Target:  5'- cCCGgCAcGCGcGCAGC-CCGCCGgcCCGCa -3'
miRNA:   3'- -GGUgGU-CGU-CGUCGuGGUGGU--GGCGa -5'
29476 3' -59.5 NC_006151.1 + 138110 0.66 0.754607
Target:  5'- gCCGCUGGCGGaCAugcuGCGCgGCCugGCCGUg -3'
miRNA:   3'- -GGUGGUCGUC-GU----CGUGgUGG--UGGCGa -5'
29476 3' -59.5 NC_006151.1 + 137904 0.67 0.66613
Target:  5'- gCCAaggucgaCGGCGGCGGCuGCCACgGgCGCc -3'
miRNA:   3'- -GGUg------GUCGUCGUCG-UGGUGgUgGCGa -5'
29476 3' -59.5 NC_006151.1 + 137656 0.66 0.715954
Target:  5'- cCCGucCCGGCGGacgAGCGCCcgccgugcgGCUGCCGCg -3'
miRNA:   3'- -GGU--GGUCGUCg--UCGUGG---------UGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 137406 0.74 0.299146
Target:  5'- cCCGCCgGGgGGCGcccuCGCCGCCGCCGCg -3'
miRNA:   3'- -GGUGG-UCgUCGUc---GUGGUGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 136987 0.66 0.715954
Target:  5'- nCGCCGGgCGGCgGGCGCgCGCgCACgGCg -3'
miRNA:   3'- gGUGGUC-GUCG-UCGUG-GUG-GUGgCGa -5'
29476 3' -59.5 NC_006151.1 + 136964 0.67 0.645954
Target:  5'- nCCGCCuGCuGgAGC-UgGCCGCCGCg -3'
miRNA:   3'- -GGUGGuCGuCgUCGuGgUGGUGGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.