miRNA display CGI


Results 21 - 40 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29476 5' -54.7 NC_006151.1 + 36172 0.8 0.22059
Target:  5'- cCAGCAGCAGCAGCAGCcccgccggggcucgGGCGagaucguggugcuagACGACg -3'
miRNA:   3'- cGUCGUCGUCGUCGUCG--------------UCGU---------------UGUUG- -5'
29476 5' -54.7 NC_006151.1 + 96717 0.79 0.231567
Target:  5'- gGCGGCGGCGGacgaggaGGCGGCGggcGCGACGACg -3'
miRNA:   3'- -CGUCGUCGUCg------UCGUCGU---CGUUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 59402 0.79 0.231567
Target:  5'- gGCAccGCAGCaccucgAGCAGCAGCGGCGcCAGCu -3'
miRNA:   3'- -CGU--CGUCG------UCGUCGUCGUCGUuGUUG- -5'
29476 5' -54.7 NC_006151.1 + 130877 0.79 0.237527
Target:  5'- cGCAGUgGGCGGCGGCGGUggaGGCGGCGGCc -3'
miRNA:   3'- -CGUCG-UCGUCGUCGUCG---UCGUUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 136925 0.79 0.237527
Target:  5'- aGgAGCAGCAGCAGCcgGGCGcCGACGGCg -3'
miRNA:   3'- -CgUCGUCGUCGUCG--UCGUcGUUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 97364 0.79 0.243615
Target:  5'- cGCGGCGGCGGCgGGC-GCGGCGGgGGCg -3'
miRNA:   3'- -CGUCGUCGUCG-UCGuCGUCGUUgUUG- -5'
29476 5' -54.7 NC_006151.1 + 90721 0.79 0.249832
Target:  5'- cGCAgGCGGCGGCGaCGGUGGCGGCGGCg -3'
miRNA:   3'- -CGU-CGUCGUCGUcGUCGUCGUUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 109904 0.78 0.269271
Target:  5'- cGCcGCGGCGGCAGCAGCAGaGACc-- -3'
miRNA:   3'- -CGuCGUCGUCGUCGUCGUCgUUGuug -5'
29476 5' -54.7 NC_006151.1 + 132042 0.78 0.276016
Target:  5'- gGCGGCGcGCGGCAGC-GCGGCGgagaACGGCg -3'
miRNA:   3'- -CGUCGU-CGUCGUCGuCGUCGU----UGUUG- -5'
29476 5' -54.7 NC_006151.1 + 83051 0.78 0.276016
Target:  5'- cGC-GCAGCGGCAGCAGCuuGGCcACGAg -3'
miRNA:   3'- -CGuCGUCGUCGUCGUCG--UCGuUGUUg -5'
29476 5' -54.7 NC_006151.1 + 87476 0.78 0.282896
Target:  5'- cCAGCAGCGGCAGCcGCcGCGGCcGCc -3'
miRNA:   3'- cGUCGUCGUCGUCGuCGuCGUUGuUG- -5'
29476 5' -54.7 NC_006151.1 + 10012 0.77 0.327028
Target:  5'- -gAGCGGCGGCGGCGGUcGCcGCGGCc -3'
miRNA:   3'- cgUCGUCGUCGUCGUCGuCGuUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 71980 0.76 0.334861
Target:  5'- uGCGGCGGgGGCAGCuGGUAGCGcCGGCc -3'
miRNA:   3'- -CGUCGUCgUCGUCG-UCGUCGUuGUUG- -5'
29476 5' -54.7 NC_006151.1 + 60876 0.76 0.334861
Target:  5'- cGCGGCAGCcGC-GCAGCAGCcGCGcgaGCa -3'
miRNA:   3'- -CGUCGUCGuCGuCGUCGUCGuUGU---UG- -5'
29476 5' -54.7 NC_006151.1 + 10200 0.76 0.334861
Target:  5'- cGCGGCgcgGGCGGCGGCuGCAGaGGCGGCu -3'
miRNA:   3'- -CGUCG---UCGUCGUCGuCGUCgUUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 107657 0.76 0.34283
Target:  5'- aGCcGCAGCcGCAGCcGCAGCAGgGGCc -3'
miRNA:   3'- -CGuCGUCGuCGUCGuCGUCGUUgUUG- -5'
29476 5' -54.7 NC_006151.1 + 69057 0.76 0.34283
Target:  5'- cCGGCAGCGGCGGCuccucgucccccAGCGGC-ACGGCc -3'
miRNA:   3'- cGUCGUCGUCGUCG------------UCGUCGuUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 57516 0.76 0.366707
Target:  5'- cGCGGCGGCGGCGGCcgccuccGGC-GCGGCcGCg -3'
miRNA:   3'- -CGUCGUCGUCGUCG-------UCGuCGUUGuUG- -5'
29476 5' -54.7 NC_006151.1 + 105218 0.76 0.367551
Target:  5'- gGCGGaCAcGCuGCGGCAGCGGCuGACGGCc -3'
miRNA:   3'- -CGUC-GU-CGuCGUCGUCGUCG-UUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 116432 0.75 0.384699
Target:  5'- uCGGCAGCuuCAGCuugucGGCGGCGACGGCg -3'
miRNA:   3'- cGUCGUCGucGUCG-----UCGUCGUUGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.