miRNA display CGI


Results 1 - 20 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29476 5' -54.7 NC_006151.1 + 141166 0.7 0.708774
Target:  5'- gGCGGUcuucggGGUAGCGGCAGUcggGGCAGguCAACu -3'
miRNA:   3'- -CGUCG------UCGUCGUCGUCG---UCGUU--GUUG- -5'
29476 5' -54.7 NC_006151.1 + 139722 0.91 0.039997
Target:  5'- cCAGCAGCAGCAcCAGCGGCGGCGACa -3'
miRNA:   3'- cGUCGUCGUCGUcGUCGUCGUUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 139686 1.06 0.00363
Target:  5'- uGCGGCAGCGGCGGCGGCAGCAACAGCa -3'
miRNA:   3'- -CGUCGUCGUCGUCGUCGUCGUUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 139515 0.86 0.08338
Target:  5'- aCAGCGGCAaCAGCAGCGGCAGCGAg -3'
miRNA:   3'- cGUCGUCGUcGUCGUCGUCGUUGUUg -5'
29476 5' -54.7 NC_006151.1 + 138419 0.69 0.719203
Target:  5'- uCAGCAGUgcuucgcuacaaAGU-GCGGCAGCAacGCGACg -3'
miRNA:   3'- cGUCGUCG------------UCGuCGUCGUCGU--UGUUG- -5'
29476 5' -54.7 NC_006151.1 + 136925 0.79 0.237527
Target:  5'- aGgAGCAGCAGCAGCcgGGCGcCGACGGCg -3'
miRNA:   3'- -CgUCGUCGUCGUCG--UCGUcGUUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 135087 0.73 0.518195
Target:  5'- gGCGGgGGCGGCggggccgggcgGGCGGCGGUAGCGcGCg -3'
miRNA:   3'- -CGUCgUCGUCG-----------UCGUCGUCGUUGU-UG- -5'
29476 5' -54.7 NC_006151.1 + 135008 0.7 0.698273
Target:  5'- gGCGGgGGCGcGgGGgGGCAGCAGCGGg -3'
miRNA:   3'- -CGUCgUCGU-CgUCgUCGUCGUUGUUg -5'
29476 5' -54.7 NC_006151.1 + 134209 0.68 0.81726
Target:  5'- cGCAGC-GCGGgGGCGGUcGCAccacCAACg -3'
miRNA:   3'- -CGUCGuCGUCgUCGUCGuCGUu---GUUG- -5'
29476 5' -54.7 NC_006151.1 + 134017 0.68 0.81726
Target:  5'- cCAGCGcGCAG-AGC-GCGGCGACGAg -3'
miRNA:   3'- cGUCGU-CGUCgUCGuCGUCGUUGUUg -5'
29476 5' -54.7 NC_006151.1 + 133962 0.84 0.1227
Target:  5'- cGCAGCAGCGGCAGCGGCcccucGGUggaGACGAUg -3'
miRNA:   3'- -CGUCGUCGUCGUCGUCG-----UCG---UUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 133675 0.71 0.64506
Target:  5'- cGCGGCGGCGcGCccccgaGGCGGUcucgucGGCGGCGACc -3'
miRNA:   3'- -CGUCGUCGU-CG------UCGUCG------UCGUUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 133631 0.68 0.769911
Target:  5'- cGCGGCGGCcggGGCGGUGGUccGGguGCGAg -3'
miRNA:   3'- -CGUCGUCG---UCGUCGUCG--UCguUGUUg -5'
29476 5' -54.7 NC_006151.1 + 133352 0.74 0.452549
Target:  5'- cGCGGCGGCGGUgguggugguggugguGGUGGCGGCcggGGCGGCg -3'
miRNA:   3'- -CGUCGUCGUCG---------------UCGUCGUCG---UUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 132455 0.7 0.677099
Target:  5'- gGUAGC-GCAGCAccgcGCGGCAGUAGgcgucCAGCa -3'
miRNA:   3'- -CGUCGuCGUCGU----CGUCGUCGUU-----GUUG- -5'
29476 5' -54.7 NC_006151.1 + 132157 0.68 0.798806
Target:  5'- aCGGCGcGCAGCugcGCGGCcGGCAcCGGCg -3'
miRNA:   3'- cGUCGU-CGUCGu--CGUCG-UCGUuGUUG- -5'
29476 5' -54.7 NC_006151.1 + 132042 0.78 0.276016
Target:  5'- gGCGGCGcGCGGCAGC-GCGGCGgagaACGGCg -3'
miRNA:   3'- -CGUCGU-CGUCGUCGuCGUCGU----UGUUG- -5'
29476 5' -54.7 NC_006151.1 + 131890 0.69 0.749958
Target:  5'- gGCAGCA-CGGCcgagggcgacGGgGGCGGCAGCAGg -3'
miRNA:   3'- -CGUCGUcGUCG----------UCgUCGUCGUUGUUg -5'
29476 5' -54.7 NC_006151.1 + 130933 0.66 0.867919
Target:  5'- cGCGGgGGCGGgGGCGGCGGgGGg--- -3'
miRNA:   3'- -CGUCgUCGUCgUCGUCGUCgUUguug -5'
29476 5' -54.7 NC_006151.1 + 130877 0.79 0.237527
Target:  5'- cGCAGUgGGCGGCGGCGGUggaGGCGGCGGCc -3'
miRNA:   3'- -CGUCG-UCGUCGUCGUCG---UCGUUGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.