Results 21 - 40 of 98 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29479 | 5' | -52.6 | NC_006151.1 | + | 110794 | 0.67 | 0.945997 |
Target: 5'- cGGGGCUaGGGcggGGGGCGAgggcaGAAGGu -3' miRNA: 3'- uCCUCGA-CCUua-CCCUGCUa----CUUCUg -5' |
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29479 | 5' | -52.6 | NC_006151.1 | + | 33082 | 0.67 | 0.95041 |
Target: 5'- aGGGGGCgaGGGc--GGGCGGUGGAGGg -3' miRNA: 3'- -UCCUCGa-CCUuacCCUGCUACUUCUg -5' |
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29479 | 5' | -52.6 | NC_006151.1 | + | 34350 | 0.66 | 0.968855 |
Target: 5'- uGGGGCgugucucgUGGggUGGGAgGGgggaccgGGAGAg -3' miRNA: 3'- uCCUCG--------ACCuuACCCUgCUa------CUUCUg -5' |
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29479 | 5' | -52.6 | NC_006151.1 | + | 77606 | 0.66 | 0.968855 |
Target: 5'- cGGAGCUGGAccucUGcGGccGCGcgGAgcuGGACg -3' miRNA: 3'- uCCUCGACCUu---AC-CC--UGCuaCU---UCUG- -5' |
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29479 | 5' | -52.6 | NC_006151.1 | + | 121554 | 0.66 | 0.968855 |
Target: 5'- gGGGAGgaGGAG-GGGAa---GggGACg -3' miRNA: 3'- -UCCUCgaCCUUaCCCUgcuaCuuCUG- -5' |
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29479 | 5' | -52.6 | NC_006151.1 | + | 15801 | 0.66 | 0.970082 |
Target: 5'- aAGGGGa-GGAcgGGGgggaagacggcgaagACGGUGAAGAa -3' miRNA: 3'- -UCCUCgaCCUuaCCC---------------UGCUACUUCUg -5' |
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29479 | 5' | -52.6 | NC_006151.1 | + | 30829 | 0.66 | 0.971857 |
Target: 5'- gAGGAGUUGc-GUGGGcggagaggaGCGAgGAGGACu -3' miRNA: 3'- -UCCUCGACcuUACCC---------UGCUaCUUCUG- -5' |
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29479 | 5' | -52.6 | NC_006151.1 | + | 33167 | 0.66 | 0.971857 |
Target: 5'- cGGGGGCggGGAGgaaGGGAgGuGUGggGGg -3' miRNA: 3'- -UCCUCGa-CCUUa--CCCUgC-UACuuCUg -5' |
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29479 | 5' | -52.6 | NC_006151.1 | + | 137598 | 0.66 | 0.971857 |
Target: 5'- cGGGGUcGGGAUcgGGGGCGcgGGcggGGACc -3' miRNA: 3'- uCCUCGaCCUUA--CCCUGCuaCU---UCUG- -5' |
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29479 | 5' | -52.6 | NC_006151.1 | + | 44335 | 0.66 | 0.974375 |
Target: 5'- aAGGAGa-GGAgggccgcggacggGUGGGACGGcgGggGAg -3' miRNA: 3'- -UCCUCgaCCU-------------UACCCUGCUa-CuuCUg -5' |
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29479 | 5' | -52.6 | NC_006151.1 | + | 42263 | 0.66 | 0.967593 |
Target: 5'- gGGGAGCggGGggUGGGaucGCGAgccucucgccccgGggGuCg -3' miRNA: 3'- -UCCUCGa-CCuuACCC---UGCUa------------CuuCuG- -5' |
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29479 | 5' | -52.6 | NC_006151.1 | + | 5846 | 0.66 | 0.965965 |
Target: 5'- gGGGAgGCUgcGGAggGGGACGAgcgcccggggccgccGggGGCc -3' miRNA: 3'- -UCCU-CGA--CCUuaCCCUGCUa--------------CuuCUG- -5' |
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29479 | 5' | -52.6 | NC_006151.1 | + | 80324 | 0.67 | 0.95041 |
Target: 5'- cAGGAGUuuUGGGGggaccGGGGCGAgGgcGGCu -3' miRNA: 3'- -UCCUCG--ACCUUa----CCCUGCUaCuuCUG- -5' |
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29479 | 5' | -52.6 | NC_006151.1 | + | 43359 | 0.67 | 0.953763 |
Target: 5'- gGGGGGggGGGAgagagaccgucgGGGGCGGUGguGGCc -3' miRNA: 3'- -UCCUCgaCCUUa-----------CCCUGCUACuuCUG- -5' |
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29479 | 5' | -52.6 | NC_006151.1 | + | 37429 | 0.67 | 0.954576 |
Target: 5'- gAGGGGCUc---UGGGACGAgGAcGACg -3' miRNA: 3'- -UCCUCGAccuuACCCUGCUaCUuCUG- -5' |
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29479 | 5' | -52.6 | NC_006151.1 | + | 8562 | 0.67 | 0.958499 |
Target: 5'- gAGaGAGCgugcgUGuGggUGGGugGGugUGAGGGCc -3' miRNA: 3'- -UC-CUCG-----AC-CuuACCCugCU--ACUUCUG- -5' |
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29479 | 5' | -52.6 | NC_006151.1 | + | 27303 | 0.67 | 0.958499 |
Target: 5'- gGGGGGCgugGGggUcgaggcggGGGACG--GggGGCu -3' miRNA: 3'- -UCCUCGa--CCuuA--------CCCUGCuaCuuCUG- -5' |
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29479 | 5' | -52.6 | NC_006151.1 | + | 36194 | 0.66 | 0.961825 |
Target: 5'- cGGGGCUcGGGcgagaucGUGGugcuaGACGAcGAAGACg -3' miRNA: 3'- uCCUCGA-CCU-------UACC-----CUGCUaCUUCUG- -5' |
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29479 | 5' | -52.6 | NC_006151.1 | + | 44030 | 0.66 | 0.964622 |
Target: 5'- gGGGAGCcggccgucgagaagUGGAugaGGGACag-GggGACg -3' miRNA: 3'- -UCCUCG--------------ACCUua-CCCUGcuaCuuCUG- -5' |
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29479 | 5' | -52.6 | NC_006151.1 | + | 141359 | 0.66 | 0.965633 |
Target: 5'- cAGGAGCgucuccgaguaGGAcgGGGGCGGgccccGGGCa -3' miRNA: 3'- -UCCUCGa----------CCUuaCCCUGCUacu--UCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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