miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29479 5' -52.6 NC_006151.1 + 15801 0.66 0.970082
Target:  5'- aAGGGGa-GGAcgGGGgggaagacggcgaagACGGUGAAGAa -3'
miRNA:   3'- -UCCUCgaCCUuaCCC---------------UGCUACUUCUg -5'
29479 5' -52.6 NC_006151.1 + 16114 0.67 0.941333
Target:  5'- aGGGAGaugGGggUGGaGACGGUGGn--- -3'
miRNA:   3'- -UCCUCga-CCuuACC-CUGCUACUucug -5'
29479 5' -52.6 NC_006151.1 + 16139 0.83 0.234712
Target:  5'- aGGGAGaggGGAGUGGGAUggGGUGGAGACg -3'
miRNA:   3'- -UCCUCga-CCUUACCCUG--CUACUUCUG- -5'
29479 5' -52.6 NC_006151.1 + 16174 0.83 0.234712
Target:  5'- aGGGAGaggGGAGUGGGAUggGGUGGAGACg -3'
miRNA:   3'- -UCCUCga-CCUUACCCUG--CUACUUCUG- -5'
29479 5' -52.6 NC_006151.1 + 16209 0.83 0.234712
Target:  5'- aGGGAGaggGGAGUGGGAUggGGUGGAGACg -3'
miRNA:   3'- -UCCUCga-CCUUACCCUG--CUACUUCUG- -5'
29479 5' -52.6 NC_006151.1 + 16244 0.83 0.234712
Target:  5'- aGGGAGaggGGAGUGGGAUggGGUGGAGACg -3'
miRNA:   3'- -UCCUCga-CCUUACCCUG--CUACUUCUG- -5'
29479 5' -52.6 NC_006151.1 + 16279 0.83 0.234712
Target:  5'- aGGGAGaggGGAGUGGGAUggGGUGGAGACg -3'
miRNA:   3'- -UCCUCga-CCUUACCCUG--CUACUUCUG- -5'
29479 5' -52.6 NC_006151.1 + 16314 0.83 0.234712
Target:  5'- aGGGAGaggGGAGUGGGAUggGGUGGAGACg -3'
miRNA:   3'- -UCCUCga-CCUUACCCUG--CUACUUCUG- -5'
29479 5' -52.6 NC_006151.1 + 16349 0.83 0.234712
Target:  5'- aGGGAGaggGGAGUGGGAUggGGUGGAGACg -3'
miRNA:   3'- -UCCUCga-CCUUACCCUG--CUACUUCUG- -5'
29479 5' -52.6 NC_006151.1 + 16384 0.83 0.234712
Target:  5'- aGGGAGaggGGAGUGGGAUggGGUGGAGACg -3'
miRNA:   3'- -UCCUCga-CCUUACCCUG--CUACUUCUG- -5'
29479 5' -52.6 NC_006151.1 + 16419 0.83 0.234712
Target:  5'- aGGGAGaggGGAGUGGGAUggGGUGGAGACg -3'
miRNA:   3'- -UCCUCga-CCUUACCCUG--CUACUUCUG- -5'
29479 5' -52.6 NC_006151.1 + 16454 0.83 0.234712
Target:  5'- aGGGAGaggGGAGUGGGAUggGGUGGAGACg -3'
miRNA:   3'- -UCCUCga-CCUUACCCUG--CUACUUCUG- -5'
29479 5' -52.6 NC_006151.1 + 16489 0.83 0.234712
Target:  5'- aGGGAGaggGGAGUGGGAUggGGUGGAGACg -3'
miRNA:   3'- -UCCUCga-CCUUACCCUG--CUACUUCUG- -5'
29479 5' -52.6 NC_006151.1 + 20127 0.72 0.758519
Target:  5'- cGGGGCUGGGggGcGGGCGccgcGggGGCg -3'
miRNA:   3'- uCCUCGACCUuaC-CCUGCua--CuuCUG- -5'
29479 5' -52.6 NC_006151.1 + 22863 0.71 0.824173
Target:  5'- cAGGAGCaGGGcgGGGcugcCGGUGggGGu -3'
miRNA:   3'- -UCCUCGaCCUuaCCCu---GCUACuuCUg -5'
29479 5' -52.6 NC_006151.1 + 23013 0.7 0.849693
Target:  5'- uGGGGGCgcgGGggUGGuggaGGCGgcGAAGAa -3'
miRNA:   3'- -UCCUCGa--CCuuACC----CUGCuaCUUCUg -5'
29479 5' -52.6 NC_006151.1 + 23431 0.71 0.815281
Target:  5'- uGGGGGCgauGggUGGGAgGGUGGccccgGGGCg -3'
miRNA:   3'- -UCCUCGac-CuuACCCUgCUACU-----UCUG- -5'
29479 5' -52.6 NC_006151.1 + 26260 0.69 0.907998
Target:  5'- gGGGAGggGGAGaGGGgcaaACGAUGGggcGGACg -3'
miRNA:   3'- -UCCUCgaCCUUaCCC----UGCUACU---UCUG- -5'
29479 5' -52.6 NC_006151.1 + 27303 0.67 0.958499
Target:  5'- gGGGGGCgugGGggUcgaggcggGGGACG--GggGGCu -3'
miRNA:   3'- -UCCUCGa--CCuuA--------CCCUGCuaCuuCUG- -5'
29479 5' -52.6 NC_006151.1 + 27506 0.77 0.460187
Target:  5'- cGGGGUgGGAggGGGuGCGAUGggGGCg -3'
miRNA:   3'- uCCUCGaCCUuaCCC-UGCUACuuCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.