miRNA display CGI


Results 41 - 60 of 98 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29479 5' -52.6 NC_006151.1 + 27555 0.8 0.36184
Target:  5'- gGGGGGCUGGGcUGGGACGggGGccggguggguGGGCg -3'
miRNA:   3'- -UCCUCGACCUuACCCUGCuaCU----------UCUG- -5'
29479 5' -52.6 NC_006151.1 + 27953 0.71 0.787573
Target:  5'- cGGGGUggggagGGAGggGGGACGggGAGGAg -3'
miRNA:   3'- uCCUCGa-----CCUUa-CCCUGCuaCUUCUg -5'
29479 5' -52.6 NC_006151.1 + 29368 0.74 0.644853
Target:  5'- gGGGAGCggggcGGGAUGGGGgGA-GAGGAg -3'
miRNA:   3'- -UCCUCGa----CCUUACCCUgCUaCUUCUg -5'
29479 5' -52.6 NC_006151.1 + 29439 0.77 0.489392
Target:  5'- gGGGGGCggcgGGGAgagGGGACGcgGAGGGa -3'
miRNA:   3'- -UCCUCGa---CCUUa--CCCUGCuaCUUCUg -5'
29479 5' -52.6 NC_006151.1 + 29613 0.8 0.36184
Target:  5'- cGGGGGCUGGuGUGGGAgGAgugGggGAa -3'
miRNA:   3'- -UCCUCGACCuUACCCUgCUa--CuuCUg -5'
29479 5' -52.6 NC_006151.1 + 29661 0.72 0.748581
Target:  5'- gGGGAGgaGGAAggggggggGGGGCGGggugGggGAUc -3'
miRNA:   3'- -UCCUCgaCCUUa-------CCCUGCUa---CuuCUG- -5'
29479 5' -52.6 NC_006151.1 + 30031 0.68 0.931244
Target:  5'- gGGGAGgaGGGggGGGAgGAgugagcgGggGAa -3'
miRNA:   3'- -UCCUCgaCCUuaCCCUgCUa------CuuCUg -5'
29479 5' -52.6 NC_006151.1 + 30413 0.69 0.894857
Target:  5'- gGGGAGa-GGAAggagGGGAgGAcgGAGGGCg -3'
miRNA:   3'- -UCCUCgaCCUUa---CCCUgCUa-CUUCUG- -5'
29479 5' -52.6 NC_006151.1 + 30829 0.66 0.971857
Target:  5'- gAGGAGUUGc-GUGGGcggagaggaGCGAgGAGGACu -3'
miRNA:   3'- -UCCUCGACcuUACCC---------UGCUaCUUCUG- -5'
29479 5' -52.6 NC_006151.1 + 30977 0.75 0.570983
Target:  5'- cGGGGGacggGGAcgGGGACGggGAGGAg -3'
miRNA:   3'- -UCCUCga--CCUuaCCCUGCuaCUUCUg -5'
29479 5' -52.6 NC_006151.1 + 31408 0.7 0.849693
Target:  5'- cGGGGCgaggGGAagGGGAagGggGggGACg -3'
miRNA:   3'- uCCUCGa---CCUuaCCCUg-CuaCuuCUG- -5'
29479 5' -52.6 NC_006151.1 + 32846 0.7 0.832878
Target:  5'- gGGGGGCcGGcg-GGGAUGggGAAGAa -3'
miRNA:   3'- -UCCUCGaCCuuaCCCUGCuaCUUCUg -5'
29479 5' -52.6 NC_006151.1 + 33082 0.67 0.95041
Target:  5'- aGGGGGCgaGGGc--GGGCGGUGGAGGg -3'
miRNA:   3'- -UCCUCGa-CCUuacCCUGCUACUUCUg -5'
29479 5' -52.6 NC_006151.1 + 33167 0.66 0.971857
Target:  5'- cGGGGGCggGGAGgaaGGGAgGuGUGggGGg -3'
miRNA:   3'- -UCCUCGa-CCUUa--CCCUgC-UACuuCUg -5'
29479 5' -52.6 NC_006151.1 + 33246 0.76 0.539863
Target:  5'- aGGGGGUccgggGGAaggGUGGGGCGGUGgcGGCg -3'
miRNA:   3'- -UCCUCGa----CCU---UACCCUGCUACuuCUG- -5'
29479 5' -52.6 NC_006151.1 + 33952 0.69 0.873314
Target:  5'- cGGGGGCUcGGGGcGGGACGcgGcgcccgcgcgGGGACa -3'
miRNA:   3'- -UCCUCGA-CCUUaCCCUGCuaC----------UUCUG- -5'
29479 5' -52.6 NC_006151.1 + 34350 0.66 0.968855
Target:  5'- uGGGGCgugucucgUGGggUGGGAgGGgggaccgGGAGAg -3'
miRNA:   3'- uCCUCG--------ACCuuACCCUgCUa------CUUCUg -5'
29479 5' -52.6 NC_006151.1 + 34405 0.73 0.707836
Target:  5'- gGGGAGa-GGAggGGGugGGUGGGcGACa -3'
miRNA:   3'- -UCCUCgaCCUuaCCCugCUACUU-CUG- -5'
29479 5' -52.6 NC_006151.1 + 36194 0.66 0.961825
Target:  5'- cGGGGCUcGGGcgagaucGUGGugcuaGACGAcGAAGACg -3'
miRNA:   3'- uCCUCGA-CCU-------UACC-----CUGCUaCUUCUG- -5'
29479 5' -52.6 NC_006151.1 + 37429 0.67 0.954576
Target:  5'- gAGGGGCUc---UGGGACGAgGAcGACg -3'
miRNA:   3'- -UCCUCGAccuuACCCUGCUaCUuCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.