Results 41 - 60 of 98 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29479 | 5' | -52.6 | NC_006151.1 | + | 93427 | 0.69 | 0.901552 |
Target: 5'- gAGaGAGgaGGAggGGGGCGAgcgGggGuCg -3' miRNA: 3'- -UC-CUCgaCCUuaCCCUGCUa--CuuCuG- -5' |
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29479 | 5' | -52.6 | NC_006151.1 | + | 26260 | 0.69 | 0.907998 |
Target: 5'- gGGGAGggGGAGaGGGgcaaACGAUGGggcGGACg -3' miRNA: 3'- -UCCUCgaCCUUaCCC----UGCUACU---UCUG- -5' |
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29479 | 5' | -52.6 | NC_006151.1 | + | 70137 | 0.7 | 0.832016 |
Target: 5'- cAGGAGggGGuccGGGACGAUGAcgugcacgagcgcGGGCg -3' miRNA: 3'- -UCCUCgaCCuuaCCCUGCUACU-------------UCUG- -5' |
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29479 | 5' | -52.6 | NC_006151.1 | + | 32846 | 0.7 | 0.832878 |
Target: 5'- gGGGGGCcGGcg-GGGAUGggGAAGAa -3' miRNA: 3'- -UCCUCGaCCuuaCCCUGCuaCUUCUg -5' |
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29479 | 5' | -52.6 | NC_006151.1 | + | 23013 | 0.7 | 0.849693 |
Target: 5'- uGGGGGCgcgGGggUGGuggaGGCGgcGAAGAa -3' miRNA: 3'- -UCCUCGa--CCuuACC----CUGCuaCUUCUg -5' |
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29479 | 5' | -52.6 | NC_006151.1 | + | 11804 | 0.7 | 0.849693 |
Target: 5'- gAGGGGC-GGggUgGGGugGggGgcGGCg -3' miRNA: 3'- -UCCUCGaCCuuA-CCCugCuaCuuCUG- -5' |
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29479 | 5' | -52.6 | NC_006151.1 | + | 31408 | 0.7 | 0.849693 |
Target: 5'- cGGGGCgaggGGAagGGGAagGggGggGACg -3' miRNA: 3'- uCCUCGa---CCUuaCCCUg-CuaCuuCUG- -5' |
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29479 | 5' | -52.6 | NC_006151.1 | + | 80050 | 0.7 | 0.849693 |
Target: 5'- cGGGAGuCUGGcuGUGGGA-GA-GAGGGCg -3' miRNA: 3'- -UCCUC-GACCu-UACCCUgCUaCUUCUG- -5' |
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29479 | 5' | -52.6 | NC_006151.1 | + | 3815 | 0.7 | 0.857787 |
Target: 5'- uGGAGCUGGAcuUGGugcuGGCGGggcugGAGGGCc -3' miRNA: 3'- uCCUCGACCUu-ACC----CUGCUa----CUUCUG- -5' |
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29479 | 5' | -52.6 | NC_006151.1 | + | 89173 | 0.7 | 0.857787 |
Target: 5'- aGGcGGGCgcgGGggUcgGGGGCGGaGAGGGCg -3' miRNA: 3'- -UC-CUCGa--CCuuA--CCCUGCUaCUUCUG- -5' |
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29479 | 5' | -52.6 | NC_006151.1 | + | 71541 | 0.7 | 0.865663 |
Target: 5'- cGGGuuuauuuGCgagGGAGgggGGGGCGAgGggGACg -3' miRNA: 3'- -UCCu------CGa--CCUUa--CCCUGCUaCuuCUG- -5' |
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29479 | 5' | -52.6 | NC_006151.1 | + | 9519 | 0.71 | 0.787573 |
Target: 5'- uGGGGaaGGAAgagGGGACGggGggGAa -3' miRNA: 3'- uCCUCgaCCUUa--CCCUGCuaCuuCUg -5' |
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29479 | 5' | -52.6 | NC_006151.1 | + | 27953 | 0.71 | 0.787573 |
Target: 5'- cGGGGUggggagGGAGggGGGACGggGAGGAg -3' miRNA: 3'- uCCUCGa-----CCUUa-CCCUGCuaCUUCUg -5' |
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29479 | 5' | -52.6 | NC_006151.1 | + | 23431 | 0.71 | 0.815281 |
Target: 5'- uGGGGGCgauGggUGGGAgGGUGGccccgGGGCg -3' miRNA: 3'- -UCCUCGac-CuuACCCUgCUACU-----UCUG- -5' |
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29479 | 5' | -52.6 | NC_006151.1 | + | 22863 | 0.71 | 0.824173 |
Target: 5'- cAGGAGCaGGGcgGGGcugcCGGUGggGGu -3' miRNA: 3'- -UCCUCGaCCUuaCCCu---GCUACuuCUg -5' |
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29479 | 5' | -52.6 | NC_006151.1 | + | 15542 | 0.72 | 0.778025 |
Target: 5'- gAGGAGgaagaGGAagGGGACGAggacggGGAGACg -3' miRNA: 3'- -UCCUCga---CCUuaCCCUGCUa-----CUUCUG- -5' |
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29479 | 5' | -52.6 | NC_006151.1 | + | 44469 | 0.72 | 0.758519 |
Target: 5'- gGGGGGUgagggUGGAcgGGGGgGGUGggGGa -3' miRNA: 3'- -UCCUCG-----ACCUuaCCCUgCUACuuCUg -5' |
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29479 | 5' | -52.6 | NC_006151.1 | + | 20127 | 0.72 | 0.758519 |
Target: 5'- cGGGGCUGGGggGcGGGCGccgcGggGGCg -3' miRNA: 3'- uCCUCGACCUuaC-CCUGCua--CuuCUG- -5' |
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29479 | 5' | -52.6 | NC_006151.1 | + | 29661 | 0.72 | 0.748581 |
Target: 5'- gGGGAGgaGGAAggggggggGGGGCGGggugGggGAUc -3' miRNA: 3'- -UCCUCgaCCUUa-------CCCUGCUa---CuuCUG- -5' |
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29479 | 5' | -52.6 | NC_006151.1 | + | 10232 | 0.72 | 0.748581 |
Target: 5'- cGGAcGC-GGAggGGGGCGA-GggGACa -3' miRNA: 3'- uCCU-CGaCCUuaCCCUGCUaCuuCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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