miRNA display CGI


Results 41 - 60 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29479 5' -52.6 NC_006151.1 + 15801 0.66 0.970082
Target:  5'- aAGGGGa-GGAcgGGGgggaagacggcgaagACGGUGAAGAa -3'
miRNA:   3'- -UCCUCgaCCUuaCCC---------------UGCUACUUCUg -5'
29479 5' -52.6 NC_006151.1 + 30829 0.66 0.971857
Target:  5'- gAGGAGUUGc-GUGGGcggagaggaGCGAgGAGGACu -3'
miRNA:   3'- -UCCUCGACcuUACCC---------UGCUaCUUCUG- -5'
29479 5' -52.6 NC_006151.1 + 33167 0.66 0.971857
Target:  5'- cGGGGGCggGGAGgaaGGGAgGuGUGggGGg -3'
miRNA:   3'- -UCCUCGa-CCUUa--CCCUgC-UACuuCUg -5'
29479 5' -52.6 NC_006151.1 + 137598 0.66 0.971857
Target:  5'- cGGGGUcGGGAUcgGGGGCGcgGGcggGGACc -3'
miRNA:   3'- uCCUCGaCCUUA--CCCUGCuaCU---UCUG- -5'
29479 5' -52.6 NC_006151.1 + 44335 0.66 0.974375
Target:  5'- aAGGAGa-GGAgggccgcggacggGUGGGACGGcgGggGAg -3'
miRNA:   3'- -UCCUCgaCCU-------------UACCCUGCUa-CuuCUg -5'
29479 5' -52.6 NC_006151.1 + 27303 0.67 0.958499
Target:  5'- gGGGGGCgugGGggUcgaggcggGGGACG--GggGGCu -3'
miRNA:   3'- -UCCUCGa--CCuuA--------CCCUGCuaCuuCUG- -5'
29479 5' -52.6 NC_006151.1 + 8562 0.67 0.958499
Target:  5'- gAGaGAGCgugcgUGuGggUGGGugGGugUGAGGGCc -3'
miRNA:   3'- -UC-CUCG-----AC-CuuACCCugCU--ACUUCUG- -5'
29479 5' -52.6 NC_006151.1 + 4599 0.68 0.914192
Target:  5'- aAGGAGCcgUGGccGUGGGGCGcGUGGAcccGGCg -3'
miRNA:   3'- -UCCUCG--ACCu-UACCCUGC-UACUU---CUG- -5'
29479 5' -52.6 NC_006151.1 + 95504 0.68 0.914192
Target:  5'- aAGGGGCUgcccgucaugacGGcgcUGcGGACGAUGAGGAa -3'
miRNA:   3'- -UCCUCGA------------CCuu-AC-CCUGCUACUUCUg -5'
29479 5' -52.6 NC_006151.1 + 128734 0.68 0.920132
Target:  5'- uGGGGGCUGaGAccAUGGGGuCGAgc-GGGCg -3'
miRNA:   3'- -UCCUCGAC-CU--UACCCU-GCUacuUCUG- -5'
29479 5' -52.6 NC_006151.1 + 30031 0.68 0.931244
Target:  5'- gGGGAGgaGGGggGGGAgGAgugagcgGggGAa -3'
miRNA:   3'- -UCCUCgaCCUuaCCCUgCUa------CuuCUg -5'
29479 5' -52.6 NC_006151.1 + 133614 0.68 0.931244
Target:  5'- gAGGGGCgucugGGggUcgcggcggccGGGGCGGUGGuccgggugcgagAGGCg -3'
miRNA:   3'- -UCCUCGa----CCuuA----------CCCUGCUACU------------UCUG- -5'
29479 5' -52.6 NC_006151.1 + 11745 0.67 0.941333
Target:  5'- gAGGGGgaGGggUGcGGGCGAgUGA--GCg -3'
miRNA:   3'- -UCCUCgaCCuuAC-CCUGCU-ACUucUG- -5'
29479 5' -52.6 NC_006151.1 + 16114 0.67 0.941333
Target:  5'- aGGGAGaugGGggUGGaGACGGUGGn--- -3'
miRNA:   3'- -UCCUCga-CCuuACC-CUGCUACUucug -5'
29479 5' -52.6 NC_006151.1 + 87779 0.67 0.941333
Target:  5'- uGGGGCgGGAgagaguGUGGGugGGaGAGGGu -3'
miRNA:   3'- uCCUCGaCCU------UACCCugCUaCUUCUg -5'
29479 5' -52.6 NC_006151.1 + 110794 0.67 0.945997
Target:  5'- cGGGGCUaGGGcggGGGGCGAgggcaGAAGGu -3'
miRNA:   3'- uCCUCGA-CCUua-CCCUGCUa----CUUCUg -5'
29479 5' -52.6 NC_006151.1 + 33082 0.67 0.95041
Target:  5'- aGGGGGCgaGGGc--GGGCGGUGGAGGg -3'
miRNA:   3'- -UCCUCGa-CCUuacCCUGCUACUUCUg -5'
29479 5' -52.6 NC_006151.1 + 80324 0.67 0.95041
Target:  5'- cAGGAGUuuUGGGGggaccGGGGCGAgGgcGGCu -3'
miRNA:   3'- -UCCUCG--ACCUUa----CCCUGCUaCuuCUG- -5'
29479 5' -52.6 NC_006151.1 + 43359 0.67 0.953763
Target:  5'- gGGGGGggGGGAgagagaccgucgGGGGCGGUGguGGCc -3'
miRNA:   3'- -UCCUCgaCCUUa-----------CCCUGCUACuuCUG- -5'
29479 5' -52.6 NC_006151.1 + 37429 0.67 0.954576
Target:  5'- gAGGGGCUc---UGGGACGAgGAcGACg -3'
miRNA:   3'- -UCCUCGAccuuACCCUGCUaCUuCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.