miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29479 5' -52.6 NC_006151.1 + 33246 0.76 0.539863
Target:  5'- aGGGGGUccgggGGAaggGUGGGGCGGUGgcGGCg -3'
miRNA:   3'- -UCCUCGa----CCU---UACCCUGCUACuuCUG- -5'
29479 5' -52.6 NC_006151.1 + 30977 0.75 0.570983
Target:  5'- cGGGGGacggGGAcgGGGACGggGAGGAg -3'
miRNA:   3'- -UCCUCga--CCUuaCCCUGCuaCUUCUg -5'
29479 5' -52.6 NC_006151.1 + 51030 0.75 0.581459
Target:  5'- uGGGGGUgggaugGGGAUGGuGACGGUGguGGCg -3'
miRNA:   3'- -UCCUCGa-----CCUUACC-CUGCUACuuCUG- -5'
29479 5' -52.6 NC_006151.1 + 135127 0.75 0.613088
Target:  5'- gGGcGGGCUGGGcgGGGACGGgc-AGACc -3'
miRNA:   3'- -UC-CUCGACCUuaCCCUGCUacuUCUG- -5'
29479 5' -52.6 NC_006151.1 + 43708 0.74 0.623672
Target:  5'- gGGGAGa-GGAAccgaaaaaucgGGGACGGUGggGGCg -3'
miRNA:   3'- -UCCUCgaCCUUa----------CCCUGCUACuuCUG- -5'
29479 5' -52.6 NC_006151.1 + 29368 0.74 0.644853
Target:  5'- gGGGAGCggggcGGGAUGGGGgGA-GAGGAg -3'
miRNA:   3'- -UCCUCGa----CCUUACCCUgCUaCUUCUg -5'
29479 5' -52.6 NC_006151.1 + 8050 0.74 0.655432
Target:  5'- aGGGAGUUGGGGggagGGGAgccaaGAUGgcGACg -3'
miRNA:   3'- -UCCUCGACCUUa---CCCUg----CUACuuCUG- -5'
29479 5' -52.6 NC_006151.1 + 110029 0.73 0.67652
Target:  5'- uGGGGcCUGGAGgacgaggaggGGGACGAggacGggGACg -3'
miRNA:   3'- uCCUC-GACCUUa---------CCCUGCUa---CuuCUG- -5'
29479 5' -52.6 NC_006151.1 + 49735 0.73 0.697453
Target:  5'- cGGGAGCgaagacGGAGaggGGGACGugGAAGACg -3'
miRNA:   3'- -UCCUCGa-----CCUUa--CCCUGCuaCUUCUG- -5'
29479 5' -52.6 NC_006151.1 + 34405 0.73 0.707836
Target:  5'- gGGGAGa-GGAggGGGugGGUGGGcGACa -3'
miRNA:   3'- -UCCUCgaCCUuaCCCugCUACUU-CUG- -5'
29479 5' -52.6 NC_006151.1 + 10454 0.73 0.718151
Target:  5'- gAGGAGgaGGAGgacgcGGcGGCGGUGAAGGa -3'
miRNA:   3'- -UCCUCgaCCUUa----CC-CUGCUACUUCUg -5'
29479 5' -52.6 NC_006151.1 + 103980 0.73 0.727367
Target:  5'- cGGcGAGCUGGAggcggccGUGGcGGCcGUGGAGGCg -3'
miRNA:   3'- -UC-CUCGACCU-------UACC-CUGcUACUUCUG- -5'
29479 5' -52.6 NC_006151.1 + 15714 0.73 0.728386
Target:  5'- cGGAcgacgGCggGGAcgGGGAaGAUGAAGACg -3'
miRNA:   3'- uCCU-----CGa-CCUuaCCCUgCUACUUCUG- -5'
29479 5' -52.6 NC_006151.1 + 84402 0.73 0.728386
Target:  5'- gGGGAGC-GG-GUGGGcGCGGUGAuaAGGCg -3'
miRNA:   3'- -UCCUCGaCCuUACCC-UGCUACU--UCUG- -5'
29479 5' -52.6 NC_006151.1 + 137102 0.73 0.728386
Target:  5'- cGGuGCUGGccgGGGACGccUGggGGCg -3'
miRNA:   3'- uCCuCGACCuuaCCCUGCu-ACuuCUG- -5'
29479 5' -52.6 NC_006151.1 + 49536 0.72 0.738533
Target:  5'- gGGGGGaggGGggUGGGAUGGacgGAGGAg -3'
miRNA:   3'- -UCCUCga-CCuuACCCUGCUa--CUUCUg -5'
29479 5' -52.6 NC_006151.1 + 5484 0.72 0.748581
Target:  5'- uGGAGUUGGAGUugGGGuuGGaGGAGACg -3'
miRNA:   3'- uCCUCGACCUUA--CCCugCUaCUUCUG- -5'
29479 5' -52.6 NC_006151.1 + 10232 0.72 0.748581
Target:  5'- cGGAcGC-GGAggGGGGCGA-GggGACa -3'
miRNA:   3'- uCCU-CGaCCUuaCCCUGCUaCuuCUG- -5'
29479 5' -52.6 NC_006151.1 + 29661 0.72 0.748581
Target:  5'- gGGGAGgaGGAAggggggggGGGGCGGggugGggGAUc -3'
miRNA:   3'- -UCCUCgaCCUUa-------CCCUGCUa---CuuCUG- -5'
29479 5' -52.6 NC_006151.1 + 20127 0.72 0.758519
Target:  5'- cGGGGCUGGGggGcGGGCGccgcGggGGCg -3'
miRNA:   3'- uCCUCGACCUuaC-CCUGCua--CuuCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.