miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29479 5' -52.6 NC_006151.1 + 80050 0.7 0.849693
Target:  5'- cGGGAGuCUGGcuGUGGGA-GA-GAGGGCg -3'
miRNA:   3'- -UCCUC-GACCu-UACCCUgCUaCUUCUG- -5'
29479 5' -52.6 NC_006151.1 + 77606 0.66 0.968855
Target:  5'- cGGAGCUGGAccucUGcGGccGCGcgGAgcuGGACg -3'
miRNA:   3'- uCCUCGACCUu---AC-CC--UGCuaCU---UCUG- -5'
29479 5' -52.6 NC_006151.1 + 71541 0.7 0.865663
Target:  5'- cGGGuuuauuuGCgagGGAGgggGGGGCGAgGggGACg -3'
miRNA:   3'- -UCCu------CGa--CCUUa--CCCUGCUaCuuCUG- -5'
29479 5' -52.6 NC_006151.1 + 70137 0.7 0.832016
Target:  5'- cAGGAGggGGuccGGGACGAUGAcgugcacgagcgcGGGCg -3'
miRNA:   3'- -UCCUCgaCCuuaCCCUGCUACU-------------UCUG- -5'
29479 5' -52.6 NC_006151.1 + 51030 0.75 0.581459
Target:  5'- uGGGGGUgggaugGGGAUGGuGACGGUGguGGCg -3'
miRNA:   3'- -UCCUCGa-----CCUUACC-CUGCUACuuCUG- -5'
29479 5' -52.6 NC_006151.1 + 49735 0.73 0.697453
Target:  5'- cGGGAGCgaagacGGAGaggGGGACGugGAAGACg -3'
miRNA:   3'- -UCCUCGa-----CCUUa--CCCUGCuaCUUCUG- -5'
29479 5' -52.6 NC_006151.1 + 49536 0.72 0.738533
Target:  5'- gGGGGGaggGGggUGGGAUGGacgGAGGAg -3'
miRNA:   3'- -UCCUCga-CCuuACCCUGCUa--CUUCUg -5'
29479 5' -52.6 NC_006151.1 + 48244 1.09 0.005019
Target:  5'- gAGGAGCUGGAAUGGGACGAUGAAGACc -3'
miRNA:   3'- -UCCUCGACCUUACCCUGCUACUUCUG- -5'
29479 5' -52.6 NC_006151.1 + 45595 0.68 0.914192
Target:  5'- aGGGGGCgggGGGAgccccgacGGGGCGGgcgGAAGGg -3'
miRNA:   3'- -UCCUCGa--CCUUa-------CCCUGCUa--CUUCUg -5'
29479 5' -52.6 NC_006151.1 + 45319 0.77 0.479558
Target:  5'- cGGGAgGCUGGGAgGGuGGCGGUGgAGGACg -3'
miRNA:   3'- -UCCU-CGACCUUaCC-CUGCUAC-UUCUG- -5'
29479 5' -52.6 NC_006151.1 + 45146 0.69 0.894857
Target:  5'- aGGGGGUUGGAu--GGACGGcUGGauGGACg -3'
miRNA:   3'- -UCCUCGACCUuacCCUGCU-ACU--UCUG- -5'
29479 5' -52.6 NC_006151.1 + 45051 0.8 0.322227
Target:  5'- gGGGGGUgugggGGGAUGGGACGGcUGGAGAg -3'
miRNA:   3'- -UCCUCGa----CCUUACCCUGCU-ACUUCUg -5'
29479 5' -52.6 NC_006151.1 + 44469 0.72 0.758519
Target:  5'- gGGGGGUgagggUGGAcgGGGGgGGUGggGGa -3'
miRNA:   3'- -UCCUCG-----ACCUuaCCCUgCUACuuCUg -5'
29479 5' -52.6 NC_006151.1 + 44335 0.66 0.974375
Target:  5'- aAGGAGa-GGAgggccgcggacggGUGGGACGGcgGggGAg -3'
miRNA:   3'- -UCCUCgaCCU-------------UACCCUGCUa-CuuCUg -5'
29479 5' -52.6 NC_006151.1 + 44030 0.66 0.964622
Target:  5'- gGGGAGCcggccgucgagaagUGGAugaGGGACag-GggGACg -3'
miRNA:   3'- -UCCUCG--------------ACCUua-CCCUGcuaCuuCUG- -5'
29479 5' -52.6 NC_006151.1 + 43708 0.74 0.623672
Target:  5'- gGGGAGa-GGAAccgaaaaaucgGGGACGGUGggGGCg -3'
miRNA:   3'- -UCCUCgaCCUUa----------CCCUGCUACuuCUG- -5'
29479 5' -52.6 NC_006151.1 + 43359 0.67 0.953763
Target:  5'- gGGGGGggGGGAgagagaccgucgGGGGCGGUGguGGCc -3'
miRNA:   3'- -UCCUCgaCCUUa-----------CCCUGCUACuuCUG- -5'
29479 5' -52.6 NC_006151.1 + 42263 0.66 0.967593
Target:  5'- gGGGAGCggGGggUGGGaucGCGAgccucucgccccgGggGuCg -3'
miRNA:   3'- -UCCUCGa-CCuuACCC---UGCUa------------CuuCuG- -5'
29479 5' -52.6 NC_006151.1 + 37429 0.67 0.954576
Target:  5'- gAGGGGCUc---UGGGACGAgGAcGACg -3'
miRNA:   3'- -UCCUCGAccuuACCCUGCUaCUuCUG- -5'
29479 5' -52.6 NC_006151.1 + 36194 0.66 0.961825
Target:  5'- cGGGGCUcGGGcgagaucGUGGugcuaGACGAcGAAGACg -3'
miRNA:   3'- uCCUCGA-CCU-------UACC-----CUGCUaCUUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.