Results 1 - 20 of 98 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29479 | 5' | -52.6 | NC_006151.1 | + | 142531 | 0.68 | 0.912974 |
Target: 5'- aGGGGGUUGGGGgaaagggGGGAaCGAggggguugggggGAAGGCg -3' miRNA: 3'- -UCCUCGACCUUa------CCCU-GCUa-----------CUUCUG- -5' |
|||||||
29479 | 5' | -52.6 | NC_006151.1 | + | 141359 | 0.66 | 0.965633 |
Target: 5'- cAGGAGCgucuccgaguaGGAcgGGGGCGGgccccGGGCa -3' miRNA: 3'- -UCCUCGa----------CCUuaCCCUGCUacu--UCUG- -5' |
|||||||
29479 | 5' | -52.6 | NC_006151.1 | + | 137598 | 0.66 | 0.971857 |
Target: 5'- cGGGGUcGGGAUcgGGGGCGcgGGcggGGACc -3' miRNA: 3'- uCCUCGaCCUUA--CCCUGCuaCU---UCUG- -5' |
|||||||
29479 | 5' | -52.6 | NC_006151.1 | + | 137102 | 0.73 | 0.728386 |
Target: 5'- cGGuGCUGGccgGGGACGccUGggGGCg -3' miRNA: 3'- uCCuCGACCuuaCCCUGCu-ACuuCUG- -5' |
|||||||
29479 | 5' | -52.6 | NC_006151.1 | + | 135127 | 0.75 | 0.613088 |
Target: 5'- gGGcGGGCUGGGcgGGGACGGgc-AGACc -3' miRNA: 3'- -UC-CUCGACCUuaCCCUGCUacuUCUG- -5' |
|||||||
29479 | 5' | -52.6 | NC_006151.1 | + | 133614 | 0.68 | 0.931244 |
Target: 5'- gAGGGGCgucugGGggUcgcggcggccGGGGCGGUGGuccgggugcgagAGGCg -3' miRNA: 3'- -UCCUCGa----CCuuA----------CCCUGCUACU------------UCUG- -5' |
|||||||
29479 | 5' | -52.6 | NC_006151.1 | + | 130867 | 0.69 | 0.894857 |
Target: 5'- -cGGGCgGGAccgcaGUGGGcggcgGCGGUGGAGGCg -3' miRNA: 3'- ucCUCGaCCU-----UACCC-----UGCUACUUCUG- -5' |
|||||||
29479 | 5' | -52.6 | NC_006151.1 | + | 128734 | 0.68 | 0.920132 |
Target: 5'- uGGGGGCUGaGAccAUGGGGuCGAgc-GGGCg -3' miRNA: 3'- -UCCUCGAC-CU--UACCCU-GCUacuUCUG- -5' |
|||||||
29479 | 5' | -52.6 | NC_006151.1 | + | 127911 | 0.68 | 0.914192 |
Target: 5'- cGGGGGCcccucgGGGAgcgGGGGCGgcG-AGACg -3' miRNA: 3'- -UCCUCGa-----CCUUa--CCCUGCuaCuUCUG- -5' |
|||||||
29479 | 5' | -52.6 | NC_006151.1 | + | 121554 | 0.66 | 0.968855 |
Target: 5'- gGGGAGgaGGAG-GGGAa---GggGACg -3' miRNA: 3'- -UCCUCgaCCUUaCCCUgcuaCuuCUG- -5' |
|||||||
29479 | 5' | -52.6 | NC_006151.1 | + | 112035 | 0.69 | 0.880733 |
Target: 5'- cGGGAGCUGGGGccgGcGGGCGGgcGgcGGCg -3' miRNA: 3'- -UCCUCGACCUUa--C-CCUGCUa-CuuCUG- -5' |
|||||||
29479 | 5' | -52.6 | NC_006151.1 | + | 110794 | 0.67 | 0.945997 |
Target: 5'- cGGGGCUaGGGcggGGGGCGAgggcaGAAGGu -3' miRNA: 3'- uCCUCGA-CCUua-CCCUGCUa----CUUCUg -5' |
|||||||
29479 | 5' | -52.6 | NC_006151.1 | + | 110029 | 0.73 | 0.67652 |
Target: 5'- uGGGGcCUGGAGgacgaggaggGGGACGAggacGggGACg -3' miRNA: 3'- uCCUC-GACCUUa---------CCCUGCUa---CuuCUG- -5' |
|||||||
29479 | 5' | -52.6 | NC_006151.1 | + | 103980 | 0.73 | 0.727367 |
Target: 5'- cGGcGAGCUGGAggcggccGUGGcGGCcGUGGAGGCg -3' miRNA: 3'- -UC-CUCGACCU-------UACC-CUGcUACUUCUG- -5' |
|||||||
29479 | 5' | -52.6 | NC_006151.1 | + | 95504 | 0.68 | 0.914192 |
Target: 5'- aAGGGGCUgcccgucaugacGGcgcUGcGGACGAUGAGGAa -3' miRNA: 3'- -UCCUCGA------------CCuu-AC-CCUGCUACUUCUg -5' |
|||||||
29479 | 5' | -52.6 | NC_006151.1 | + | 93427 | 0.69 | 0.901552 |
Target: 5'- gAGaGAGgaGGAggGGGGCGAgcgGggGuCg -3' miRNA: 3'- -UC-CUCgaCCUuaCCCUGCUa--CuuCuG- -5' |
|||||||
29479 | 5' | -52.6 | NC_006151.1 | + | 89173 | 0.7 | 0.857787 |
Target: 5'- aGGcGGGCgcgGGggUcgGGGGCGGaGAGGGCg -3' miRNA: 3'- -UC-CUCGa--CCuuA--CCCUGCUaCUUCUG- -5' |
|||||||
29479 | 5' | -52.6 | NC_006151.1 | + | 87779 | 0.67 | 0.941333 |
Target: 5'- uGGGGCgGGAgagaguGUGGGugGGaGAGGGu -3' miRNA: 3'- uCCUCGaCCU------UACCCugCUaCUUCUg -5' |
|||||||
29479 | 5' | -52.6 | NC_006151.1 | + | 84402 | 0.73 | 0.728386 |
Target: 5'- gGGGAGC-GG-GUGGGcGCGGUGAuaAGGCg -3' miRNA: 3'- -UCCUCGaCCuUACCC-UGCUACU--UCUG- -5' |
|||||||
29479 | 5' | -52.6 | NC_006151.1 | + | 80324 | 0.67 | 0.95041 |
Target: 5'- cAGGAGUuuUGGGGggaccGGGGCGAgGgcGGCu -3' miRNA: 3'- -UCCUCG--ACCUUa----CCCUGCUaCuuCUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home