miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29482 5' -57.5 NC_006151.1 + 2130 0.67 0.784819
Target:  5'- cGCCGCCGcggacgccgacgaUCUccacaGAGUcCCCGuccucGCCGGGGc -3'
miRNA:   3'- -CGGUGGU-------------AGA-----CUCAcGGGU-----UGGCCCC- -5'
29482 5' -57.5 NC_006151.1 + 138628 0.67 0.803566
Target:  5'- cGCCGCCGg--GGGcgcGCCgGACUGGGa -3'
miRNA:   3'- -CGGUGGUagaCUCa--CGGgUUGGCCCc -5'
29482 5' -57.5 NC_006151.1 + 3718 0.67 0.812264
Target:  5'- cGCCGCuCGggcgCUGGGU-CCgGGCCGGcGGc -3'
miRNA:   3'- -CGGUG-GUa---GACUCAcGGgUUGGCC-CC- -5'
29482 5' -57.5 NC_006151.1 + 9035 0.67 0.820802
Target:  5'- cCCGCCcgCcgGGGcGCCCcgcgugcuCCGGGGg -3'
miRNA:   3'- cGGUGGuaGa-CUCaCGGGuu------GGCCCC- -5'
29482 5' -57.5 NC_006151.1 + 26230 0.67 0.820802
Target:  5'- gGCCGCCGUguuuaUUGAGgGCaCAACagaGGGGa -3'
miRNA:   3'- -CGGUGGUA-----GACUCaCGgGUUGg--CCCC- -5'
29482 5' -57.5 NC_006151.1 + 40041 0.67 0.818258
Target:  5'- cGCCGCCGggggCgccgugGAGacccaccgGCCCGcgggggccucgggcGCCGGGGc -3'
miRNA:   3'- -CGGUGGUa---Ga-----CUCa-------CGGGU--------------UGGCCCC- -5'
29482 5' -57.5 NC_006151.1 + 646 0.67 0.812264
Target:  5'- cGCCGgCuUCcGGG-GCgCGGCCGGGGc -3'
miRNA:   3'- -CGGUgGuAGaCUCaCGgGUUGGCCCC- -5'
29482 5' -57.5 NC_006151.1 + 133610 0.67 0.812264
Target:  5'- gGCCGaggggCGUCUGGGgGUCgcggCGGCCGGGGc -3'
miRNA:   3'- -CGGUg----GUAGACUCaCGG----GUUGGCCCC- -5'
29482 5' -57.5 NC_006151.1 + 99669 0.67 0.812264
Target:  5'- cGCagaGCCG-CUGGG-GCCUGcgcgccgacggcGCCGGGGa -3'
miRNA:   3'- -CGg--UGGUaGACUCaCGGGU------------UGGCCCC- -5'
29482 5' -57.5 NC_006151.1 + 11995 0.67 0.812264
Target:  5'- cGCCGCUGUCUGuGGcGCCCGucgucucucccGCCGGc- -3'
miRNA:   3'- -CGGUGGUAGAC-UCaCGGGU-----------UGGCCcc -5'
29482 5' -57.5 NC_006151.1 + 89771 0.68 0.729257
Target:  5'- cCCACCAUCUGGGaGaCCAuccACUGGaGGg -3'
miRNA:   3'- cGGUGGUAGACUCaCgGGU---UGGCC-CC- -5'
29482 5' -57.5 NC_006151.1 + 130908 0.68 0.729257
Target:  5'- cGUCGCCGUCgucGGUgGCCgGGCCcgcGGGGg -3'
miRNA:   3'- -CGGUGGUAGac-UCA-CGGgUUGG---CCCC- -5'
29482 5' -57.5 NC_006151.1 + 21375 0.68 0.738924
Target:  5'- gGCCACCcgCUGGGcacgaCGGCCGGcGGg -3'
miRNA:   3'- -CGGUGGuaGACUCacgg-GUUGGCC-CC- -5'
29482 5' -57.5 NC_006151.1 + 39378 0.68 0.738924
Target:  5'- -aCACCAUCgagGAcuggcccgcGgacgGCCCGGCCGuGGGg -3'
miRNA:   3'- cgGUGGUAGa--CU---------Ca---CGGGUUGGC-CCC- -5'
29482 5' -57.5 NC_006151.1 + 71238 0.68 0.748501
Target:  5'- cGCCGaccCCGUC-GAGUaccugaacGCCCAGCuCGGGa -3'
miRNA:   3'- -CGGU---GGUAGaCUCA--------CGGGUUG-GCCCc -5'
29482 5' -57.5 NC_006151.1 + 55455 0.68 0.757035
Target:  5'- cGCCGCCG-------GCCCcGCCGGGGg -3'
miRNA:   3'- -CGGUGGUagacucaCGGGuUGGCCCC- -5'
29482 5' -57.5 NC_006151.1 + 141864 0.68 0.757978
Target:  5'- cGCCgcGCCcUCUG-GUGCCgGaggGCCGGGc -3'
miRNA:   3'- -CGG--UGGuAGACuCACGGgU---UGGCCCc -5'
29482 5' -57.5 NC_006151.1 + 3830 0.68 0.776599
Target:  5'- uGCUGgCGgggCUgGAGgGCCCGgaGCCGGGGa -3'
miRNA:   3'- -CGGUgGUa--GA-CUCaCGGGU--UGGCCCC- -5'
29482 5' -57.5 NC_006151.1 + 56107 0.68 0.776599
Target:  5'- cGCCGCCG-C----UGCCUcGCCGGGGa -3'
miRNA:   3'- -CGGUGGUaGacucACGGGuUGGCCCC- -5'
29482 5' -57.5 NC_006151.1 + 67912 0.69 0.706726
Target:  5'- aGCCucggguCCAUCUGcaggaAGUagacgcggccgcgcGCCCAccacgcGCCGGGGg -3'
miRNA:   3'- -CGGu-----GGUAGAC-----UCA--------------CGGGU------UGGCCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.