miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29482 5' -57.5 NC_006151.1 + 28223 0.73 0.469028
Target:  5'- cGCC-CCGUCgagGGGgccgggccgacggGCCCAuugGCCGGGGc -3'
miRNA:   3'- -CGGuGGUAGa--CUCa------------CGGGU---UGGCCCC- -5'
29482 5' -57.5 NC_006151.1 + 29756 0.66 0.853214
Target:  5'- -aCACUcUCUGuGUGUgCAcacgggACCGGGGa -3'
miRNA:   3'- cgGUGGuAGACuCACGgGU------UGGCCCC- -5'
29482 5' -57.5 NC_006151.1 + 32333 0.73 0.454388
Target:  5'- cGUCcCCAUCUccGAG-GCCCGaggcGCCGGGGc -3'
miRNA:   3'- -CGGuGGUAGA--CUCaCGGGU----UGGCCCC- -5'
29482 5' -57.5 NC_006151.1 + 36115 0.66 0.845387
Target:  5'- gGCCGCCGUCcucgcgGCCgCGGCCGGa- -3'
miRNA:   3'- -CGGUGGUAGacuca-CGG-GUUGGCCcc -5'
29482 5' -57.5 NC_006151.1 + 37160 0.66 0.845387
Target:  5'- cGCCACCGUCUccgccGGcGCCC-GCCGcGGc -3'
miRNA:   3'- -CGGUGGUAGAc----UCaCGGGuUGGC-CCc -5'
29482 5' -57.5 NC_006151.1 + 39378 0.68 0.738924
Target:  5'- -aCACCAUCgagGAcuggcccgcGgacgGCCCGGCCGuGGGg -3'
miRNA:   3'- cgGUGGUAGa--CU---------Ca---CGGGUUGGC-CCC- -5'
29482 5' -57.5 NC_006151.1 + 40041 0.67 0.818258
Target:  5'- cGCCGCCGggggCgccgugGAGacccaccgGCCCGcgggggccucgggcGCCGGGGc -3'
miRNA:   3'- -CGGUGGUa---Ga-----CUCa-------CGGGU--------------UGGCCCC- -5'
29482 5' -57.5 NC_006151.1 + 45572 0.7 0.64971
Target:  5'- gGCCAUCGUCccGGGacgGCCCGaggggGCgGGGGg -3'
miRNA:   3'- -CGGUGGUAGa-CUCa--CGGGU-----UGgCCCC- -5'
29482 5' -57.5 NC_006151.1 + 46682 0.7 0.633561
Target:  5'- cGCCAUCGuccggcgagggguccUCUGcgcagcauGGUGCCUcgggGGCCGGGGc -3'
miRNA:   3'- -CGGUGGU---------------AGAC--------UCACGGG----UUGGCCCC- -5'
29482 5' -57.5 NC_006151.1 + 47420 1.11 0.001568
Target:  5'- gGCCACCAUCUGAGUGCCCAACCGGGGc -3'
miRNA:   3'- -CGGUGGUAGACUCACGGGUUGGCCCC- -5'
29482 5' -57.5 NC_006151.1 + 48643 0.71 0.559298
Target:  5'- cGCCACCGccgCUGcAGcagcaGCCCccGCCGGGGc -3'
miRNA:   3'- -CGGUGGUa--GAC-UCa----CGGGu-UGGCCCC- -5'
29482 5' -57.5 NC_006151.1 + 55455 0.68 0.757035
Target:  5'- cGCCGCCG-------GCCCcGCCGGGGg -3'
miRNA:   3'- -CGGUGGUagacucaCGGGuUGGCCCC- -5'
29482 5' -57.5 NC_006151.1 + 56107 0.68 0.776599
Target:  5'- cGCCGCCG-C----UGCCUcGCCGGGGa -3'
miRNA:   3'- -CGGUGGUaGacucACGGGuUGGCCCC- -5'
29482 5' -57.5 NC_006151.1 + 64761 0.7 0.659788
Target:  5'- gGCCACCGUgCgcgGGG-GCUgGuuGCCGGGGc -3'
miRNA:   3'- -CGGUGGUA-Ga--CUCaCGGgU--UGGCCCC- -5'
29482 5' -57.5 NC_006151.1 + 66186 0.66 0.845387
Target:  5'- gGCCGCCAUaa-AG-GCCCGgacgaACuCGGGGu -3'
miRNA:   3'- -CGGUGGUAgacUCaCGGGU-----UG-GCCCC- -5'
29482 5' -57.5 NC_006151.1 + 67912 0.69 0.706726
Target:  5'- aGCCucggguCCAUCUGcaggaAGUagacgcggccgcgcGCCCAccacgcGCCGGGGg -3'
miRNA:   3'- -CGGu-----GGUAGAC-----UCA--------------CGGGU------UGGCCCC- -5'
29482 5' -57.5 NC_006151.1 + 69691 0.74 0.410307
Target:  5'- cGCCucGCCGUCgauGGUGgCCGccGCCGGGGg -3'
miRNA:   3'- -CGG--UGGUAGac-UCACgGGU--UGGCCCC- -5'
29482 5' -57.5 NC_006151.1 + 69903 0.67 0.789339
Target:  5'- cGCCGCCGUCgugaagccgucaaagUGGGcGCCgAgcGCCaGGGGc -3'
miRNA:   3'- -CGGUGGUAG---------------ACUCaCGGgU--UGG-CCCC- -5'
29482 5' -57.5 NC_006151.1 + 71238 0.68 0.748501
Target:  5'- cGCCGaccCCGUC-GAGUaccugaacGCCCAGCuCGGGa -3'
miRNA:   3'- -CGGU---GGUAGaCUCA--------CGGGUUG-GCCCc -5'
29482 5' -57.5 NC_006151.1 + 73581 0.66 0.845387
Target:  5'- aCCACCGUCaGGGcGa--AGCCGGGGu -3'
miRNA:   3'- cGGUGGUAGaCUCaCgggUUGGCCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.