miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29482 5' -57.5 NC_006151.1 + 646 0.67 0.812264
Target:  5'- cGCCGgCuUCcGGG-GCgCGGCCGGGGc -3'
miRNA:   3'- -CGGUgGuAGaCUCaCGgGUUGGCCCC- -5'
29482 5' -57.5 NC_006151.1 + 1797 0.66 0.853214
Target:  5'- gGCCACCGggCcGGGgagGCaggcGCCGGGGa -3'
miRNA:   3'- -CGGUGGUa-GaCUCa--CGggu-UGGCCCC- -5'
29482 5' -57.5 NC_006151.1 + 2130 0.67 0.784819
Target:  5'- cGCCGCCGcggacgccgacgaUCUccacaGAGUcCCCGuccucGCCGGGGc -3'
miRNA:   3'- -CGGUGGU-------------AGA-----CUCAcGGGU-----UGGCCCC- -5'
29482 5' -57.5 NC_006151.1 + 3446 0.72 0.539581
Target:  5'- aGCCGCCGUCgggcgcgGGGUgcucgggcauggGCCCGAgCGGGc -3'
miRNA:   3'- -CGGUGGUAGa------CUCA------------CGGGUUgGCCCc -5'
29482 5' -57.5 NC_006151.1 + 3718 0.67 0.812264
Target:  5'- cGCCGCuCGggcgCUGGGU-CCgGGCCGGcGGc -3'
miRNA:   3'- -CGGUG-GUa---GACUCAcGGgUUGGCC-CC- -5'
29482 5' -57.5 NC_006151.1 + 3830 0.68 0.776599
Target:  5'- uGCUGgCGgggCUgGAGgGCCCGgaGCCGGGGa -3'
miRNA:   3'- -CGGUgGUa--GA-CUCaCGGGU--UGGCCCC- -5'
29482 5' -57.5 NC_006151.1 + 4181 0.67 0.794717
Target:  5'- cGCgGCCGUCaccuccucGAGgcaggcggGCCCGagggcgGCCGGGGc -3'
miRNA:   3'- -CGgUGGUAGa-------CUCa-------CGGGU------UGGCCCC- -5'
29482 5' -57.5 NC_006151.1 + 5634 0.73 0.472726
Target:  5'- cGCCGCCGggcgCcGAGaccgGCCCGGCggCGGGGg -3'
miRNA:   3'- -CGGUGGUa---GaCUCa---CGGGUUG--GCCCC- -5'
29482 5' -57.5 NC_006151.1 + 5707 0.73 0.49143
Target:  5'- gGCCACCGcugCUGGcuGUGCUgGuggcGCCGGGGu -3'
miRNA:   3'- -CGGUGGUa--GACU--CACGGgU----UGGCCCC- -5'
29482 5' -57.5 NC_006151.1 + 5877 0.69 0.669844
Target:  5'- gGCCGCCGggggccccggccUCUgccgcugcGAGUGCU--GCCGGGGu -3'
miRNA:   3'- -CGGUGGU------------AGA--------CUCACGGguUGGCCCC- -5'
29482 5' -57.5 NC_006151.1 + 5924 0.69 0.719508
Target:  5'- gGCgGCCGgggCccgGAGccgGCCCGggACCGGGGc -3'
miRNA:   3'- -CGgUGGUa--Ga--CUCa--CGGGU--UGGCCCC- -5'
29482 5' -57.5 NC_006151.1 + 5978 0.73 0.46351
Target:  5'- uGCUcggaGCCugaugGAGaGCCCGACCGGGGg -3'
miRNA:   3'- -CGG----UGGuaga-CUCaCGGGUUGGCCCC- -5'
29482 5' -57.5 NC_006151.1 + 9035 0.67 0.820802
Target:  5'- cCCGCCcgCcgGGGcGCCCcgcgugcuCCGGGGg -3'
miRNA:   3'- cGGUGGuaGa-CUCaCGGGuu------GGCCCC- -5'
29482 5' -57.5 NC_006151.1 + 11018 0.66 0.845387
Target:  5'- cCCGCCcgCUcgcucgccGGGccGgCCGGCCGGGGg -3'
miRNA:   3'- cGGUGGuaGA--------CUCa-CgGGUUGGCCCC- -5'
29482 5' -57.5 NC_006151.1 + 11995 0.67 0.812264
Target:  5'- cGCCGCUGUCUGuGGcGCCCGucgucucucccGCCGGc- -3'
miRNA:   3'- -CGGUGGUAGAC-UCaCGGGU-----------UGGCCcc -5'
29482 5' -57.5 NC_006151.1 + 17078 0.71 0.598266
Target:  5'- gGCCGCCG-CcGGGUcaggcgcgcGCCCGucggggcGCCGGGGg -3'
miRNA:   3'- -CGGUGGUaGaCUCA---------CGGGU-------UGGCCCC- -5'
29482 5' -57.5 NC_006151.1 + 18748 0.78 0.23801
Target:  5'- cGCCGCCGgggccccacgGGGUGCCCGgggcccggGCCGGGGc -3'
miRNA:   3'- -CGGUGGUaga-------CUCACGGGU--------UGGCCCC- -5'
29482 5' -57.5 NC_006151.1 + 21375 0.68 0.738924
Target:  5'- gGCCACCcgCUGGGcacgaCGGCCGGcGGg -3'
miRNA:   3'- -CGGUGGuaGACUCacgg-GUUGGCC-CC- -5'
29482 5' -57.5 NC_006151.1 + 24868 0.66 0.845387
Target:  5'- aCCACCGUgUccgccucGCCCGGCCGGcGGg -3'
miRNA:   3'- cGGUGGUAgAcuca---CGGGUUGGCC-CC- -5'
29482 5' -57.5 NC_006151.1 + 26230 0.67 0.820802
Target:  5'- gGCCGCCGUguuuaUUGAGgGCaCAACagaGGGGa -3'
miRNA:   3'- -CGGUGGUA-----GACUCaCGgGUUGg--CCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.