miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29482 5' -57.5 NC_006151.1 + 141864 0.68 0.757978
Target:  5'- cGCCgcGCCcUCUG-GUGCCgGaggGCCGGGc -3'
miRNA:   3'- -CGG--UGGuAGACuCACGGgU---UGGCCCc -5'
29482 5' -57.5 NC_006151.1 + 138628 0.67 0.803566
Target:  5'- cGCCGCCGg--GGGcgcGCCgGACUGGGa -3'
miRNA:   3'- -CGGUGGUagaCUCa--CGGgUUGGCCCc -5'
29482 5' -57.5 NC_006151.1 + 136873 0.66 0.829174
Target:  5'- aCCGCCGUCgagGAGcGCCUcgcgccccacGGCUGGGu -3'
miRNA:   3'- cGGUGGUAGa--CUCaCGGG----------UUGGCCCc -5'
29482 5' -57.5 NC_006151.1 + 133610 0.67 0.812264
Target:  5'- gGCCGaggggCGUCUGGGgGUCgcggCGGCCGGGGc -3'
miRNA:   3'- -CGGUg----GUAGACUCaCGG----GUUGGCCCC- -5'
29482 5' -57.5 NC_006151.1 + 132845 0.67 0.785725
Target:  5'- gGCCACCAc--GGGcgGCCgGcCCGGGGc -3'
miRNA:   3'- -CGGUGGUagaCUCa-CGGgUuGGCCCC- -5'
29482 5' -57.5 NC_006151.1 + 130908 0.68 0.729257
Target:  5'- cGUCGCCGUCgucGGUgGCCgGGCCcgcGGGGg -3'
miRNA:   3'- -CGGUGGUAGac-UCA-CGGgUUGG---CCCC- -5'
29482 5' -57.5 NC_006151.1 + 126047 0.76 0.322565
Target:  5'- cGCCGCCGUCggcaaggugguccUGGGUGCCa---CGGGGg -3'
miRNA:   3'- -CGGUGGUAG-------------ACUCACGGguugGCCCC- -5'
29482 5' -57.5 NC_006151.1 + 121441 0.74 0.393434
Target:  5'- cGCCgGCCucgCUG-GUGCCCGcggaGCUGGGGg -3'
miRNA:   3'- -CGG-UGGua-GACuCACGGGU----UGGCCCC- -5'
29482 5' -57.5 NC_006151.1 + 121331 0.67 0.803566
Target:  5'- gGCCGCCGagCUG-GUGCgCGACCucgaGGGc -3'
miRNA:   3'- -CGGUGGUa-GACuCACGgGUUGGc---CCC- -5'
29482 5' -57.5 NC_006151.1 + 120112 0.66 0.837371
Target:  5'- cGCCGCCGcgUGGuggacaUGCUCAACgGGGGc -3'
miRNA:   3'- -CGGUGGUagACUc-----ACGGGUUGgCCCC- -5'
29482 5' -57.5 NC_006151.1 + 113085 0.66 0.860846
Target:  5'- cGCgGCCGUCgcc--GCCgCcACCGGGGg -3'
miRNA:   3'- -CGgUGGUAGacucaCGG-GuUGGCCCC- -5'
29482 5' -57.5 NC_006151.1 + 102277 0.76 0.345595
Target:  5'- cGCUGCCg---GAGcgcgGCCCGGCCGGGGa -3'
miRNA:   3'- -CGGUGGuagaCUCa---CGGGUUGGCCCC- -5'
29482 5' -57.5 NC_006151.1 + 99669 0.67 0.812264
Target:  5'- cGCagaGCCG-CUGGG-GCCUGcgcgccgacggcGCCGGGGa -3'
miRNA:   3'- -CGg--UGGUaGACUCaCGGGU------------UGGCCCC- -5'
29482 5' -57.5 NC_006151.1 + 98054 0.66 0.829174
Target:  5'- aCCACCAgccCcGGGcGCUCGGCCuGGGGc -3'
miRNA:   3'- cGGUGGUa--GaCUCaCGGGUUGG-CCCC- -5'
29482 5' -57.5 NC_006151.1 + 91905 0.81 0.155156
Target:  5'- cGCCACCGUCUG-GUGCgcucggaggccaucuCCAcgccGCCGGGGg -3'
miRNA:   3'- -CGGUGGUAGACuCACG---------------GGU----UGGCCCC- -5'
29482 5' -57.5 NC_006151.1 + 91395 0.66 0.837371
Target:  5'- cGCUGCCGUCgacguUGCCCAggaacacgGCCuGGGGc -3'
miRNA:   3'- -CGGUGGUAGacuc-ACGGGU--------UGG-CCCC- -5'
29482 5' -57.5 NC_006151.1 + 89771 0.68 0.729257
Target:  5'- cCCACCAUCUGGGaGaCCAuccACUGGaGGg -3'
miRNA:   3'- cGGUGGUAGACUCaCgGGU---UGGCC-CC- -5'
29482 5' -57.5 NC_006151.1 + 83412 0.69 0.67987
Target:  5'- gGCCACCAcCaGGuUGCC--GCCGGGGg -3'
miRNA:   3'- -CGGUGGUaGaCUcACGGguUGGCCCC- -5'
29482 5' -57.5 NC_006151.1 + 82351 0.66 0.868277
Target:  5'- cGCCGCCGUggUGuacGUGCgCCGgacGCCGGGc -3'
miRNA:   3'- -CGGUGGUAg-ACu--CACG-GGU---UGGCCCc -5'
29482 5' -57.5 NC_006151.1 + 81698 0.75 0.353272
Target:  5'- gGUCGCCcgCgcGAG-GUCCAGCCGGGGc -3'
miRNA:   3'- -CGGUGGuaGa-CUCaCGGGUUGGCCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.