Results 21 - 40 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29482 | 5' | -57.5 | NC_006151.1 | + | 83412 | 0.69 | 0.67987 |
Target: 5'- gGCCACCAcCaGGuUGCC--GCCGGGGg -3' miRNA: 3'- -CGGUGGUaGaCUcACGGguUGGCCCC- -5' |
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29482 | 5' | -57.5 | NC_006151.1 | + | 67912 | 0.69 | 0.706726 |
Target: 5'- aGCCucggguCCAUCUGcaggaAGUagacgcggccgcgcGCCCAccacgcGCCGGGGg -3' miRNA: 3'- -CGGu-----GGUAGAC-----UCA--------------CGGGU------UGGCCCC- -5' |
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29482 | 5' | -57.5 | NC_006151.1 | + | 5924 | 0.69 | 0.719508 |
Target: 5'- gGCgGCCGgggCccgGAGccgGCCCGggACCGGGGc -3' miRNA: 3'- -CGgUGGUa--Ga--CUCa--CGGGU--UGGCCCC- -5' |
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29482 | 5' | -57.5 | NC_006151.1 | + | 130908 | 0.68 | 0.729257 |
Target: 5'- cGUCGCCGUCgucGGUgGCCgGGCCcgcGGGGg -3' miRNA: 3'- -CGGUGGUAGac-UCA-CGGgUUGG---CCCC- -5' |
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29482 | 5' | -57.5 | NC_006151.1 | + | 89771 | 0.68 | 0.729257 |
Target: 5'- cCCACCAUCUGGGaGaCCAuccACUGGaGGg -3' miRNA: 3'- cGGUGGUAGACUCaCgGGU---UGGCC-CC- -5' |
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29482 | 5' | -57.5 | NC_006151.1 | + | 21375 | 0.68 | 0.738924 |
Target: 5'- gGCCACCcgCUGGGcacgaCGGCCGGcGGg -3' miRNA: 3'- -CGGUGGuaGACUCacgg-GUUGGCC-CC- -5' |
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29482 | 5' | -57.5 | NC_006151.1 | + | 39378 | 0.68 | 0.738924 |
Target: 5'- -aCACCAUCgagGAcuggcccgcGgacgGCCCGGCCGuGGGg -3' miRNA: 3'- cgGUGGUAGa--CU---------Ca---CGGGUUGGC-CCC- -5' |
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29482 | 5' | -57.5 | NC_006151.1 | + | 71238 | 0.68 | 0.748501 |
Target: 5'- cGCCGaccCCGUC-GAGUaccugaacGCCCAGCuCGGGa -3' miRNA: 3'- -CGGU---GGUAGaCUCA--------CGGGUUG-GCCCc -5' |
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29482 | 5' | -57.5 | NC_006151.1 | + | 55455 | 0.68 | 0.757035 |
Target: 5'- cGCCGCCG-------GCCCcGCCGGGGg -3' miRNA: 3'- -CGGUGGUagacucaCGGGuUGGCCCC- -5' |
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29482 | 5' | -57.5 | NC_006151.1 | + | 141864 | 0.68 | 0.757978 |
Target: 5'- cGCCgcGCCcUCUG-GUGCCgGaggGCCGGGc -3' miRNA: 3'- -CGG--UGGuAGACuCACGGgU---UGGCCCc -5' |
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29482 | 5' | -57.5 | NC_006151.1 | + | 3830 | 0.68 | 0.776599 |
Target: 5'- uGCUGgCGgggCUgGAGgGCCCGgaGCCGGGGa -3' miRNA: 3'- -CGGUgGUa--GA-CUCaCGGGU--UGGCCCC- -5' |
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29482 | 5' | -57.5 | NC_006151.1 | + | 56107 | 0.68 | 0.776599 |
Target: 5'- cGCCGCCG-C----UGCCUcGCCGGGGa -3' miRNA: 3'- -CGGUGGUaGacucACGGGuUGGCCCC- -5' |
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29482 | 5' | -57.5 | NC_006151.1 | + | 2130 | 0.67 | 0.784819 |
Target: 5'- cGCCGCCGcggacgccgacgaUCUccacaGAGUcCCCGuccucGCCGGGGc -3' miRNA: 3'- -CGGUGGU-------------AGA-----CUCAcGGGU-----UGGCCCC- -5' |
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29482 | 5' | -57.5 | NC_006151.1 | + | 132845 | 0.67 | 0.785725 |
Target: 5'- gGCCACCAc--GGGcgGCCgGcCCGGGGc -3' miRNA: 3'- -CGGUGGUagaCUCa-CGGgUuGGCCCC- -5' |
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29482 | 5' | -57.5 | NC_006151.1 | + | 69903 | 0.67 | 0.789339 |
Target: 5'- cGCCGCCGUCgugaagccgucaaagUGGGcGCCgAgcGCCaGGGGc -3' miRNA: 3'- -CGGUGGUAG---------------ACUCaCGGgU--UGG-CCCC- -5' |
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29482 | 5' | -57.5 | NC_006151.1 | + | 4181 | 0.67 | 0.794717 |
Target: 5'- cGCgGCCGUCaccuccucGAGgcaggcggGCCCGagggcgGCCGGGGc -3' miRNA: 3'- -CGgUGGUAGa-------CUCa-------CGGGU------UGGCCCC- -5' |
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29482 | 5' | -57.5 | NC_006151.1 | + | 78662 | 0.67 | 0.798274 |
Target: 5'- gGCgGCCGgggCgcGGGUGCuggacgggcucuacgCCGGCCGGGGc -3' miRNA: 3'- -CGgUGGUa--Ga-CUCACG---------------GGUUGGCCCC- -5' |
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29482 | 5' | -57.5 | NC_006151.1 | + | 121331 | 0.67 | 0.803566 |
Target: 5'- gGCCGCCGagCUG-GUGCgCGACCucgaGGGc -3' miRNA: 3'- -CGGUGGUa-GACuCACGgGUUGGc---CCC- -5' |
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29482 | 5' | -57.5 | NC_006151.1 | + | 138628 | 0.67 | 0.803566 |
Target: 5'- cGCCGCCGg--GGGcgcGCCgGACUGGGa -3' miRNA: 3'- -CGGUGGUagaCUCa--CGGgUUGGCCCc -5' |
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29482 | 5' | -57.5 | NC_006151.1 | + | 80673 | 0.67 | 0.803566 |
Target: 5'- cGCaCGCagagaGUCUGGGUucgcgGCCCGGCgCGGGc -3' miRNA: 3'- -CG-GUGg----UAGACUCA-----CGGGUUG-GCCCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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