Results 41 - 60 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29482 | 5' | -57.5 | NC_006151.1 | + | 67912 | 0.69 | 0.706726 |
Target: 5'- aGCCucggguCCAUCUGcaggaAGUagacgcggccgcgcGCCCAccacgcGCCGGGGg -3' miRNA: 3'- -CGGu-----GGUAGAC-----UCA--------------CGGGU------UGGCCCC- -5' |
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29482 | 5' | -57.5 | NC_006151.1 | + | 83412 | 0.69 | 0.67987 |
Target: 5'- gGCCACCAcCaGGuUGCC--GCCGGGGg -3' miRNA: 3'- -CGGUGGUaGaCUcACGGguUGGCCCC- -5' |
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29482 | 5' | -57.5 | NC_006151.1 | + | 5877 | 0.69 | 0.669844 |
Target: 5'- gGCCGCCGggggccccggccUCUgccgcugcGAGUGCU--GCCGGGGu -3' miRNA: 3'- -CGGUGGU------------AGA--------CUCACGGguUGGCCCC- -5' |
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29482 | 5' | -57.5 | NC_006151.1 | + | 64761 | 0.7 | 0.659788 |
Target: 5'- gGCCACCGUgCgcgGGG-GCUgGuuGCCGGGGc -3' miRNA: 3'- -CGGUGGUA-Ga--CUCaCGGgU--UGGCCCC- -5' |
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29482 | 5' | -57.5 | NC_006151.1 | + | 45572 | 0.7 | 0.64971 |
Target: 5'- gGCCAUCGUCccGGGacgGCCCGaggggGCgGGGGg -3' miRNA: 3'- -CGGUGGUAGa-CUCa--CGGGU-----UGgCCCC- -5' |
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29482 | 5' | -57.5 | NC_006151.1 | + | 46682 | 0.7 | 0.633561 |
Target: 5'- cGCCAUCGuccggcgagggguccUCUGcgcagcauGGUGCCUcgggGGCCGGGGc -3' miRNA: 3'- -CGGUGGU---------------AGAC--------UCACGGG----UUGGCCCC- -5' |
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29482 | 5' | -57.5 | NC_006151.1 | + | 17078 | 0.71 | 0.598266 |
Target: 5'- gGCCGCCG-CcGGGUcaggcgcgcGCCCGucggggcGCCGGGGg -3' miRNA: 3'- -CGGUGGUaGaCUCA---------CGGGU-------UGGCCCC- -5' |
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29482 | 5' | -57.5 | NC_006151.1 | + | 48643 | 0.71 | 0.559298 |
Target: 5'- cGCCACCGccgCUGcAGcagcaGCCCccGCCGGGGc -3' miRNA: 3'- -CGGUGGUa--GAC-UCa----CGGGu-UGGCCCC- -5' |
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29482 | 5' | -57.5 | NC_006151.1 | + | 3446 | 0.72 | 0.539581 |
Target: 5'- aGCCGCCGUCgggcgcgGGGUgcucgggcauggGCCCGAgCGGGc -3' miRNA: 3'- -CGGUGGUAGa------CUCA------------CGGGUUgGCCCc -5' |
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29482 | 5' | -57.5 | NC_006151.1 | + | 5707 | 0.73 | 0.49143 |
Target: 5'- gGCCACCGcugCUGGcuGUGCUgGuggcGCCGGGGu -3' miRNA: 3'- -CGGUGGUa--GACU--CACGGgU----UGGCCCC- -5' |
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29482 | 5' | -57.5 | NC_006151.1 | + | 5634 | 0.73 | 0.472726 |
Target: 5'- cGCCGCCGggcgCcGAGaccgGCCCGGCggCGGGGg -3' miRNA: 3'- -CGGUGGUa---GaCUCa---CGGGUUG--GCCCC- -5' |
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29482 | 5' | -57.5 | NC_006151.1 | + | 28223 | 0.73 | 0.469028 |
Target: 5'- cGCC-CCGUCgagGGGgccgggccgacggGCCCAuugGCCGGGGc -3' miRNA: 3'- -CGGuGGUAGa--CUCa------------CGGGU---UGGCCCC- -5' |
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29482 | 5' | -57.5 | NC_006151.1 | + | 5978 | 0.73 | 0.46351 |
Target: 5'- uGCUcggaGCCugaugGAGaGCCCGACCGGGGg -3' miRNA: 3'- -CGG----UGGuaga-CUCaCGGGUUGGCCCC- -5' |
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29482 | 5' | -57.5 | NC_006151.1 | + | 32333 | 0.73 | 0.454388 |
Target: 5'- cGUCcCCAUCUccGAG-GCCCGaggcGCCGGGGc -3' miRNA: 3'- -CGGuGGUAGA--CUCaCGGGU----UGGCCCC- -5' |
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29482 | 5' | -57.5 | NC_006151.1 | + | 69691 | 0.74 | 0.410307 |
Target: 5'- cGCCucGCCGUCgauGGUGgCCGccGCCGGGGg -3' miRNA: 3'- -CGG--UGGUAGac-UCACgGGU--UGGCCCC- -5' |
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29482 | 5' | -57.5 | NC_006151.1 | + | 121441 | 0.74 | 0.393434 |
Target: 5'- cGCCgGCCucgCUG-GUGCCCGcggaGCUGGGGg -3' miRNA: 3'- -CGG-UGGua-GACuCACGGGU----UGGCCCC- -5' |
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29482 | 5' | -57.5 | NC_006151.1 | + | 81698 | 0.75 | 0.353272 |
Target: 5'- gGUCGCCcgCgcGAG-GUCCAGCCGGGGc -3' miRNA: 3'- -CGGUGGuaGa-CUCaCGGGUUGGCCCC- -5' |
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29482 | 5' | -57.5 | NC_006151.1 | + | 102277 | 0.76 | 0.345595 |
Target: 5'- cGCUGCCg---GAGcgcgGCCCGGCCGGGGa -3' miRNA: 3'- -CGGUGGuagaCUCa---CGGGUUGGCCCC- -5' |
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29482 | 5' | -57.5 | NC_006151.1 | + | 126047 | 0.76 | 0.322565 |
Target: 5'- cGCCGCCGUCggcaaggugguccUGGGUGCCa---CGGGGg -3' miRNA: 3'- -CGGUGGUAG-------------ACUCACGGguugGCCCC- -5' |
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29482 | 5' | -57.5 | NC_006151.1 | + | 18748 | 0.78 | 0.23801 |
Target: 5'- cGCCGCCGgggccccacgGGGUGCCCGgggcccggGCCGGGGc -3' miRNA: 3'- -CGGUGGUaga-------CUCACGGGU--------UGGCCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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