miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29483 5' -50.7 NC_006151.1 + 46894 1.04 0.020089
Target:  5'- uCCGCUACCAUC-UCAUCGACCUCACCc -3'
miRNA:   3'- -GGCGAUGGUAGaAGUAGCUGGAGUGG- -5'
29483 5' -50.7 NC_006151.1 + 39820 0.85 0.28579
Target:  5'- cCCGCUGcggcCCGUCUUCGUCuccugcggccgccggGGCCUCGCCg -3'
miRNA:   3'- -GGCGAU----GGUAGAAGUAG---------------CUGGAGUGG- -5'
29483 5' -50.7 NC_006151.1 + 86207 0.8 0.522865
Target:  5'- cCCGCUGcCCAUCaaCAUCGACCacCGCCc -3'
miRNA:   3'- -GGCGAU-GGUAGaaGUAGCUGGa-GUGG- -5'
29483 5' -50.7 NC_006151.1 + 84324 0.74 0.807073
Target:  5'- gCCGCgACCGUg--CG-CGGCCUCGCCg -3'
miRNA:   3'- -GGCGaUGGUAgaaGUaGCUGGAGUGG- -5'
29483 5' -50.7 NC_006151.1 + 61703 0.74 0.816049
Target:  5'- aCCGUgACCAgCUUCuUCGGCUUCACg -3'
miRNA:   3'- -GGCGaUGGUaGAAGuAGCUGGAGUGg -5'
29483 5' -50.7 NC_006151.1 + 784 0.74 0.824849
Target:  5'- aCGCggucGCCGUCgUCAUCGuCC-CGCCg -3'
miRNA:   3'- gGCGa---UGGUAGaAGUAGCuGGaGUGG- -5'
29483 5' -50.7 NC_006151.1 + 26422 0.73 0.833464
Target:  5'- uCCGUcuUCGUCUUCGUCuuCUUCACCg -3'
miRNA:   3'- -GGCGauGGUAGAAGUAGcuGGAGUGG- -5'
29483 5' -50.7 NC_006151.1 + 107490 0.73 0.858124
Target:  5'- gCCGCUGCCcccGUCgccgCcgGUCGACC-CGCCc -3'
miRNA:   3'- -GGCGAUGG---UAGaa--G--UAGCUGGaGUGG- -5'
29483 5' -50.7 NC_006151.1 + 113131 0.73 0.858124
Target:  5'- gCCGCcggGCCcggCUaCGcCGACCUCGCCa -3'
miRNA:   3'- -GGCGa--UGGua-GAaGUaGCUGGAGUGG- -5'
29483 5' -50.7 NC_006151.1 + 99732 0.73 0.865923
Target:  5'- gCGCgGCg--C-UCGUCGACCUCGCCg -3'
miRNA:   3'- gGCGaUGguaGaAGUAGCUGGAGUGG- -5'
29483 5' -50.7 NC_006151.1 + 131804 0.72 0.894848
Target:  5'- gCGC-GCCAUCcUCcUCGGCCUCGgCu -3'
miRNA:   3'- gGCGaUGGUAGaAGuAGCUGGAGUgG- -5'
29483 5' -50.7 NC_006151.1 + 61413 0.71 0.914026
Target:  5'- aCGCcccGCCGUCcUCcUCGGCCcCGCCg -3'
miRNA:   3'- gGCGa--UGGUAGaAGuAGCUGGaGUGG- -5'
29483 5' -50.7 NC_006151.1 + 127628 0.71 0.919922
Target:  5'- aCC-CccUCGUCUUCGUCGuccuCCUCGCCg -3'
miRNA:   3'- -GGcGauGGUAGAAGUAGCu---GGAGUGG- -5'
29483 5' -50.7 NC_006151.1 + 70377 0.71 0.919922
Target:  5'- gCUGCaagAUCAUCUUCGUCu-CCUcCACCa -3'
miRNA:   3'- -GGCGa--UGGUAGAAGUAGcuGGA-GUGG- -5'
29483 5' -50.7 NC_006151.1 + 93278 0.71 0.925566
Target:  5'- cCCGCcggccCCAUCUcccuUCGGCCgUCACCa -3'
miRNA:   3'- -GGCGau---GGUAGAagu-AGCUGG-AGUGG- -5'
29483 5' -50.7 NC_006151.1 + 6858 0.71 0.93096
Target:  5'- cCCGCggcgGCCAUCUUgcccCAUCGACg--GCCa -3'
miRNA:   3'- -GGCGa---UGGUAGAA----GUAGCUGgagUGG- -5'
29483 5' -50.7 NC_006151.1 + 68796 0.71 0.93096
Target:  5'- gCCGCgGCCGUCaUCAggcccgagUCGACCaucucccgCGCCg -3'
miRNA:   3'- -GGCGaUGGUAGaAGU--------AGCUGGa-------GUGG- -5'
29483 5' -50.7 NC_006151.1 + 77673 0.71 0.93096
Target:  5'- cUCGCUGCCGg---CGUCGGCgcuCUCGCUg -3'
miRNA:   3'- -GGCGAUGGUagaaGUAGCUG---GAGUGG- -5'
29483 5' -50.7 NC_006151.1 + 132898 0.71 0.936101
Target:  5'- aCGCgACCAcgcacUCcUCGUCGcgcauCCUCACCg -3'
miRNA:   3'- gGCGaUGGU-----AGaAGUAGCu----GGAGUGG- -5'
29483 5' -50.7 NC_006151.1 + 12736 0.71 0.936101
Target:  5'- cCCGCUcauCCGUCUUCAUCG-CCgCGg- -3'
miRNA:   3'- -GGCGAu--GGUAGAAGUAGCuGGaGUgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.