miRNA display CGI


Results 21 - 40 of 101 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29483 5' -50.7 NC_006151.1 + 118166 0.7 0.940515
Target:  5'- gCCGCUggugcgcggccugACCGUCgaggcCGGCUUCGCCg -3'
miRNA:   3'- -GGCGA-------------UGGUAGaaguaGCUGGAGUGG- -5'
29483 5' -50.7 NC_006151.1 + 39283 0.7 0.945182
Target:  5'- gCUGCUGCUcUCggCGcgggaccUCGGCUUCGCCg -3'
miRNA:   3'- -GGCGAUGGuAGaaGU-------AGCUGGAGUGG- -5'
29483 5' -50.7 NC_006151.1 + 120675 0.7 0.948738
Target:  5'- gCGCUACUGcgaccacaagcaguUCUUCAUCaacaGCCUCACg -3'
miRNA:   3'- gGCGAUGGU--------------AGAAGUAGc---UGGAGUGg -5'
29483 5' -50.7 NC_006151.1 + 63777 0.7 0.950031
Target:  5'- cCCGCgucGCCAggCgggGUCGGCCgUCGCCa -3'
miRNA:   3'- -GGCGa--UGGUa-GaagUAGCUGG-AGUGG- -5'
29483 5' -50.7 NC_006151.1 + 65960 0.7 0.950031
Target:  5'- gCGCgGCCGcg-UCGUCGAgccgguCCUCGCCg -3'
miRNA:   3'- gGCGaUGGUagaAGUAGCU------GGAGUGG- -5'
29483 5' -50.7 NC_006151.1 + 56111 0.7 0.955777
Target:  5'- gCCGCUGCCucgccggggaggcCUUCcgCGGgUUCGCCu -3'
miRNA:   3'- -GGCGAUGGua-----------GAAGuaGCUgGAGUGG- -5'
29483 5' -50.7 NC_006151.1 + 91393 0.7 0.958096
Target:  5'- gCCGCUGCCGUCgaCGUugcccaggaacaCGGCCUgggGCCc -3'
miRNA:   3'- -GGCGAUGGUAGaaGUA------------GCUGGAg--UGG- -5'
29483 5' -50.7 NC_006151.1 + 21128 0.7 0.958096
Target:  5'- gCGCcACCAUCaUCAUCGAC---GCCg -3'
miRNA:   3'- gGCGaUGGUAGaAGUAGCUGgagUGG- -5'
29483 5' -50.7 NC_006151.1 + 87079 0.69 0.961773
Target:  5'- gCCGCccCCcgCgag--CGACCUCGCCg -3'
miRNA:   3'- -GGCGauGGuaGaaguaGCUGGAGUGG- -5'
29483 5' -50.7 NC_006151.1 + 104981 0.69 0.961773
Target:  5'- gCCGCcgGCCucgCUcaaCAUCGACCggGCCg -3'
miRNA:   3'- -GGCGa-UGGua-GAa--GUAGCUGGagUGG- -5'
29483 5' -50.7 NC_006151.1 + 115229 0.69 0.961773
Target:  5'- gCCGCUGCCGcCgaga-CGGCCUCgucGCCa -3'
miRNA:   3'- -GGCGAUGGUaGaaguaGCUGGAG---UGG- -5'
29483 5' -50.7 NC_006151.1 + 24982 0.69 0.961773
Target:  5'- gCCGCgucagccccCCGUCaUCGUCGuCCUCGuCCc -3'
miRNA:   3'- -GGCGau-------GGUAGaAGUAGCuGGAGU-GG- -5'
29483 5' -50.7 NC_006151.1 + 133235 0.69 0.961773
Target:  5'- gCCGC-GCCAgggcaCGUUGGCCUCGCa -3'
miRNA:   3'- -GGCGaUGGUagaa-GUAGCUGGAGUGg -5'
29483 5' -50.7 NC_006151.1 + 28047 0.69 0.96522
Target:  5'- cCCGCgAUCGUCgUCGUCGAggccgaugccgaCgUCACCg -3'
miRNA:   3'- -GGCGaUGGUAGaAGUAGCU------------GgAGUGG- -5'
29483 5' -50.7 NC_006151.1 + 7103 0.69 0.971448
Target:  5'- cCCGCUcugcgGCCAUCUuggCcgCGGCg-CGCCa -3'
miRNA:   3'- -GGCGA-----UGGUAGAa--GuaGCUGgaGUGG- -5'
29483 5' -50.7 NC_006151.1 + 107229 0.69 0.973972
Target:  5'- cCCGCUGuucaccuCCAUCaUCAUgGGCgaCGCCc -3'
miRNA:   3'- -GGCGAU-------GGUAGaAGUAgCUGgaGUGG- -5'
29483 5' -50.7 NC_006151.1 + 65523 0.69 0.974242
Target:  5'- uCCGCgGCCAgcagCgUCAUgaCGGCCUCgugGCCg -3'
miRNA:   3'- -GGCGaUGGUa---GaAGUA--GCUGGAG---UGG- -5'
29483 5' -50.7 NC_006151.1 + 123912 0.68 0.976581
Target:  5'- gCGCggcgGCCGUgacgCGggccgccUCGGCCUCGCCg -3'
miRNA:   3'- gGCGa---UGGUAgaa-GU-------AGCUGGAGUGG- -5'
29483 5' -50.7 NC_006151.1 + 83890 0.68 0.976831
Target:  5'- uCCGCUGCCAcaaccgCUUCuaCGaacGCCUgCGCCg -3'
miRNA:   3'- -GGCGAUGGUa-----GAAGuaGC---UGGA-GUGG- -5'
29483 5' -50.7 NC_006151.1 + 114037 0.68 0.976831
Target:  5'- aCGCUGCCcu-----UCGACCUCgGCCa -3'
miRNA:   3'- gGCGAUGGuagaaguAGCUGGAG-UGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.