miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29483 5' -50.7 NC_006151.1 + 138082 0.66 0.99332
Target:  5'- aCCGCgagGCCuUCUUCGccCGGCgCaCGCCg -3'
miRNA:   3'- -GGCGa--UGGuAGAAGUa-GCUG-GaGUGG- -5'
29483 5' -50.7 NC_006151.1 + 60312 0.66 0.99332
Target:  5'- uCCGg-GCCGUgCgcCAUCGGCUUCACg -3'
miRNA:   3'- -GGCgaUGGUA-GaaGUAGCUGGAGUGg -5'
29483 5' -50.7 NC_006151.1 + 115761 0.66 0.99332
Target:  5'- cCUGCUGCUGUCcagCAgcaCGGCCUCcUCg -3'
miRNA:   3'- -GGCGAUGGUAGaa-GUa--GCUGGAGuGG- -5'
29483 5' -50.7 NC_006151.1 + 107819 0.66 0.99332
Target:  5'- cCCGCcGCCGg--UCAUCaACC-CGCCc -3'
miRNA:   3'- -GGCGaUGGUagaAGUAGcUGGaGUGG- -5'
29483 5' -50.7 NC_006151.1 + 70817 0.67 0.992308
Target:  5'- -aGCUACCGgcgcagCUggAUCGugCUCgGCCu -3'
miRNA:   3'- ggCGAUGGUa-----GAagUAGCugGAG-UGG- -5'
29483 5' -50.7 NC_006151.1 + 7023 0.67 0.992308
Target:  5'- cCCGCggcgGCCAUC-UCGgcUCGcCCggGCCa -3'
miRNA:   3'- -GGCGa---UGGUAGaAGU--AGCuGGagUGG- -5'
29483 5' -50.7 NC_006151.1 + 48306 0.67 0.992308
Target:  5'- gCGCUGCCAcccCUaCAUCGcguaCUCGCUg -3'
miRNA:   3'- gGCGAUGGUa--GAaGUAGCug--GAGUGG- -5'
29483 5' -50.7 NC_006151.1 + 92149 0.67 0.992308
Target:  5'- gCGCcaagGCCAUCauggCcgCGGCCgugcgCGCCg -3'
miRNA:   3'- gGCGa---UGGUAGaa--GuaGCUGGa----GUGG- -5'
29483 5' -50.7 NC_006151.1 + 112746 0.67 0.992308
Target:  5'- gCGCcacgGCCGUCUUCGU-GGCC--GCCu -3'
miRNA:   3'- gGCGa---UGGUAGAAGUAgCUGGagUGG- -5'
29483 5' -50.7 NC_006151.1 + 138922 0.67 0.992308
Target:  5'- cUCGCcGCCAcggUCAUCGGCUgcagcuaCACCa -3'
miRNA:   3'- -GGCGaUGGUagaAGUAGCUGGa------GUGG- -5'
29483 5' -50.7 NC_006151.1 + 66588 0.67 0.992308
Target:  5'- gCGCgcgGCCGagg-CGcUCGACUUCGCCg -3'
miRNA:   3'- gGCGa--UGGUagaaGU-AGCUGGAGUGG- -5'
29483 5' -50.7 NC_006151.1 + 98810 0.67 0.991179
Target:  5'- gCGCUGCCG-CUggCGUUGGCggugCGCCa -3'
miRNA:   3'- gGCGAUGGUaGAa-GUAGCUGga--GUGG- -5'
29483 5' -50.7 NC_006151.1 + 122777 0.67 0.991179
Target:  5'- -gGCUGCUcgUgggCGgcugcgCGGCCUCGCCc -3'
miRNA:   3'- ggCGAUGGuaGaa-GUa-----GCUGGAGUGG- -5'
29483 5' -50.7 NC_006151.1 + 123877 0.67 0.991179
Target:  5'- gCUGCUGCUGgcgCUcgCcgCGGCCcCGCCg -3'
miRNA:   3'- -GGCGAUGGUa--GAa-GuaGCUGGaGUGG- -5'
29483 5' -50.7 NC_006151.1 + 35851 0.67 0.991179
Target:  5'- uCCGCcGCCcgCUcuccgcgcUCGgcgccCGGCCUCGCUc -3'
miRNA:   3'- -GGCGaUGGuaGA--------AGUa----GCUGGAGUGG- -5'
29483 5' -50.7 NC_006151.1 + 131142 0.67 0.991179
Target:  5'- gCCGCgGCCGUCauagcCGUCGuCgUCAUCg -3'
miRNA:   3'- -GGCGaUGGUAGaa---GUAGCuGgAGUGG- -5'
29483 5' -50.7 NC_006151.1 + 57215 0.67 0.99106
Target:  5'- cCCGCUcgacgagGCCGUCgcaggCGgcgcgcgCGGCCUCGgCg -3'
miRNA:   3'- -GGCGA-------UGGUAGaa---GUa------GCUGGAGUgG- -5'
29483 5' -50.7 NC_006151.1 + 101785 0.67 0.989924
Target:  5'- cCCGggGCCAUCc----CGuCCUCGCCg -3'
miRNA:   3'- -GGCgaUGGUAGaaguaGCuGGAGUGG- -5'
29483 5' -50.7 NC_006151.1 + 86278 0.67 0.989924
Target:  5'- aCCGCgGCCccuUCUUCcUCGGCgUCGUCa -3'
miRNA:   3'- -GGCGaUGGu--AGAAGuAGCUGgAGUGG- -5'
29483 5' -50.7 NC_006151.1 + 102005 0.67 0.989924
Target:  5'- cCCGCgcACCcgCgagccCAUgGGCUUCGCCg -3'
miRNA:   3'- -GGCGa-UGGuaGaa---GUAgCUGGAGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.