miRNA display CGI


Results 41 - 60 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29483 5' -50.7 NC_006151.1 + 102005 0.67 0.989924
Target:  5'- cCCGCgcACCcgCgagccCAUgGGCUUCGCCg -3'
miRNA:   3'- -GGCGa-UGGuaGaa---GUAgCUGGAGUGG- -5'
29483 5' -50.7 NC_006151.1 + 136090 0.67 0.989656
Target:  5'- cCCGCUGcgcuCCAUCgcggUCGggcgccgcgggcUGACCUCGCUc -3'
miRNA:   3'- -GGCGAU----GGUAGa---AGUa-----------GCUGGAGUGG- -5'
29483 5' -50.7 NC_006151.1 + 101392 0.67 0.988532
Target:  5'- gCGCgcGCCuUCUUCGaCGGCCUCugggcgcagcgcGCCg -3'
miRNA:   3'- gGCGa-UGGuAGAAGUaGCUGGAG------------UGG- -5'
29483 5' -50.7 NC_006151.1 + 109193 0.67 0.988532
Target:  5'- gUCGUcgUGCC-UCUgc--CGGCCUCGCCa -3'
miRNA:   3'- -GGCG--AUGGuAGAaguaGCUGGAGUGG- -5'
29483 5' -50.7 NC_006151.1 + 86976 0.67 0.988532
Target:  5'- aCCGCcGCCAcCgcCGcUCGcCCUCGCCc -3'
miRNA:   3'- -GGCGaUGGUaGaaGU-AGCuGGAGUGG- -5'
29483 5' -50.7 NC_006151.1 + 59820 0.67 0.986995
Target:  5'- gCCGCUGuCCG-CgaUGUCGGCCgcCACCg -3'
miRNA:   3'- -GGCGAU-GGUaGaaGUAGCUGGa-GUGG- -5'
29483 5' -50.7 NC_006151.1 + 116088 0.68 0.985305
Target:  5'- gCCGCcGCCGUCguccUCGUCGGCgauggCGCg -3'
miRNA:   3'- -GGCGaUGGUAGa---AGUAGCUGga---GUGg -5'
29483 5' -50.7 NC_006151.1 + 104809 0.68 0.985305
Target:  5'- gCCGCgACCuggCggCGgcgcgcgaCGGCCUCGCCg -3'
miRNA:   3'- -GGCGaUGGua-GaaGUa-------GCUGGAGUGG- -5'
29483 5' -50.7 NC_006151.1 + 98173 0.68 0.985305
Target:  5'- cCCGUUGCCgAUCUgcacgcUCAUCG-UCgCGCCg -3'
miRNA:   3'- -GGCGAUGG-UAGA------AGUAGCuGGaGUGG- -5'
29483 5' -50.7 NC_006151.1 + 78855 0.68 0.985305
Target:  5'- cCCGCgccaaCAUCUcCAUCGuCCUCAa- -3'
miRNA:   3'- -GGCGaug--GUAGAaGUAGCuGGAGUgg -5'
29483 5' -50.7 NC_006151.1 + 65864 0.68 0.985305
Target:  5'- uCCGCUccuccagcaGCCAUUgggUCAgcagGGCCUCGuCCg -3'
miRNA:   3'- -GGCGA---------UGGUAGa--AGUag--CUGGAGU-GG- -5'
29483 5' -50.7 NC_006151.1 + 117985 0.68 0.985127
Target:  5'- cCCGCUcCCGUCUcgucUCGccgcgucUCG-UCUCACCc -3'
miRNA:   3'- -GGCGAuGGUAGA----AGU-------AGCuGGAGUGG- -5'
29483 5' -50.7 NC_006151.1 + 60624 0.68 0.984948
Target:  5'- gCCGCcGCCGUCgUCGgggcggggcuccCGGCCcgCGCCg -3'
miRNA:   3'- -GGCGaUGGUAGaAGUa-----------GCUGGa-GUGG- -5'
29483 5' -50.7 NC_006151.1 + 37158 0.68 0.983452
Target:  5'- gCCGCcACCGUCUcCGcCGGCgCcCGCCg -3'
miRNA:   3'- -GGCGaUGGUAGAaGUaGCUG-GaGUGG- -5'
29483 5' -50.7 NC_006151.1 + 118694 0.68 0.981428
Target:  5'- cCCGCgccCCuUCUUCAaCGGCC-CGCUc -3'
miRNA:   3'- -GGCGau-GGuAGAAGUaGCUGGaGUGG- -5'
29483 5' -50.7 NC_006151.1 + 135483 0.68 0.981428
Target:  5'- uCCGCgcggGCCAggCggCGcgCGGCCUCgGCCg -3'
miRNA:   3'- -GGCGa---UGGUa-GaaGUa-GCUGGAG-UGG- -5'
29483 5' -50.7 NC_006151.1 + 117312 0.68 0.981428
Target:  5'- gCGCUcGCCAcgccgagggCggCGUCGGCCUCgGCCu -3'
miRNA:   3'- gGCGA-UGGUa--------GaaGUAGCUGGAG-UGG- -5'
29483 5' -50.7 NC_006151.1 + 92113 0.68 0.981428
Target:  5'- aCCGCgg-CAUCUUCGggaaCGGCCgCAUCg -3'
miRNA:   3'- -GGCGaugGUAGAAGUa---GCUGGaGUGG- -5'
29483 5' -50.7 NC_006151.1 + 45505 0.68 0.981428
Target:  5'- gCCGCUuucagccCCAggagcCGUCGACC-CACCg -3'
miRNA:   3'- -GGCGAu------GGUagaa-GUAGCUGGaGUGG- -5'
29483 5' -50.7 NC_006151.1 + 37469 0.68 0.979224
Target:  5'- cCCGCUACCGcg--CcgCGGCCggGCCc -3'
miRNA:   3'- -GGCGAUGGUagaaGuaGCUGGagUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.